Mercurial > repos > iuc > stacks2_cstacks
comparison test-data/shortreads/process_shortreads.out @ 0:da351b9031de draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
author | iuc |
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date | Mon, 01 Jul 2019 11:03:59 -0400 |
parents | |
children | fcce77c09289 |
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-1:000000000000 | 0:da351b9031de |
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1 process_shortreads v2.2, executed 2018-12-03 21:27:19 | |
2 process_shortreads -p stacks_inputs/ -i fastq -b /tmp/tmpiZT6X4/files/000/dataset_2.dat --inline_null -o stacks_outputs | |
3 File Retained Reads Low Quality Ambiguous Barcodes Trimmed Reads Orphaned paired-end reads Total | |
4 R1.fastq 7000 0 0 0 0 7000 | |
5 | |
6 Total Sequences 7000 | |
7 Ambiguous Barcodes 0 | |
8 Low Quality 0 | |
9 Trimmed Reads 0 | |
10 Orphaned Paired-ends 0 | |
11 Retained Reads 7000 | |
12 | |
13 Barcode Filename Total Retained | |
14 ATGGGG PopA_01 160 160 | |
15 GGGTAA PopA_02 146 146 | |
16 AGGAAA PopA_03 224 224 | |
17 TTTAAG PopA_04 168 168 | |
18 GGTGTG PopA_05 220 220 | |
19 TGATGT PopA_06 214 214 | |
20 GGTTGT PopA_07 182 182 | |
21 ATAAGT PopA_08 232 232 | |
22 AAGATA PopA_09 182 182 | |
23 TGTGAG PopA_10 168 168 | |
24 ATAGTT PopA_11 200 200 | |
25 GGAAGG PopA_12 178 178 | |
26 TTTGTG PopA_13 190 190 | |
27 TTAAAT PopA_14 166 166 | |
28 AATAAG PopA_15 152 152 | |
29 AAGAGG PopA_16 174 174 | |
30 TAGTGT PopA_17 242 242 | |
31 TGGAAG PopA_18 148 148 | |
32 GGGTTG PopA_19 110 110 | |
33 CATCAT PopA_20 178 178 | |
34 GGAGAG PopB_20 210 210 | |
35 GTTTTA PopB_01 136 136 | |
36 TGATAA PopB_02 166 166 | |
37 GTTGAT PopB_03 148 148 | |
38 AGATTA PopB_04 180 180 | |
39 GTATAG PopB_05 136 136 | |
40 TTGGGA PopB_06 166 166 | |
41 ATATAT PopB_07 242 242 | |
42 GATGAG PopB_08 208 208 | |
43 GGGAAT PopB_09 198 198 | |
44 AGTAAT PopB_10 164 164 | |
45 GGGATA PopB_11 146 146 | |
46 GAGAAG PopB_12 162 162 | |
47 AGTAGA PopB_13 204 204 | |
48 AAGGAT PopB_14 180 180 | |
49 AGGGTA PopB_15 134 134 | |
50 TGTTTT PopB_16 138 138 | |
51 ATGATG PopB_17 142 142 | |
52 GAGTTA PopB_18 160 160 | |
53 ATGTAG PopB_19 146 146 | |
54 | |
55 Sequences not recorded | |
56 Barcode Total |