Mercurial > repos > iuc > stacks2_cstacks

comparison test-data/procrad/process_radtags2.out @ 1:f4aab9196d1e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
author iuc
date Mon, 30 Sep 2019 14:18:15 -0400
parents
children 0cd2df8af811
comparison
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0:da351b9031de 1:f4aab9196d1e
1 process_radtags v2.4, executed 2019-09-30 14:57:00 (zlib-1.2.11)
2 process_radtags -p stacks_inputs/ -i gzfastq -b /tmp/tmpe_shit/files/d/e/d/dataset_ded45538-15ef-471f-9585-07ee09b6e6d4.dat --inline_null -y gzfastq -o stacks_outputs -w 0.1 -s 11 -c -q -D -e ecoRI
3 File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total
4 R1.fastq.gz 2222 0 0 4778 7000
5 R2.fastq.gz 0 0 7000 0 7000
6
7 Total Sequences 14000
8 Barcode Not Found 7000
9 Low Quality 0
10 RAD Cutsite Not Found 4778
11 Retained Reads 2222
12
13 Barcode Filename Total NoRadTag LowQuality Retained
14 ATGGGG PopA_01 160 94 0 66
15 GGGTAA PopA_02 146 86 0 60
16 AGGAAA PopA_03 224 132 0 92
17 TTTAAG PopA_04 168 146 0 22
18 GGTGTG PopA_05 220 154 0 66
19 TGATGT PopA_06 214 147 0 67
20 GGTTGT PopA_07 182 137 0 45
21 ATAAGT PopA_08 232 164 0 68
22 AAGATA PopA_09 182 134 0 48
23 TGTGAG PopA_10 168 128 0 40
24 ATAGTT PopA_11 200 132 0 68
25 GGAAGG PopA_12 178 136 0 42
26 TTTGTG PopA_13 190 152 0 38
27 TTAAAT PopA_14 166 96 0 70
28 AATAAG PopA_15 152 74 0 78
29 AAGAGG PopA_16 174 112 0 62
30 TAGTGT PopA_17 242 146 0 96
31 TGGAAG PopA_18 148 98 0 50
32 GGGTTG PopA_19 110 64 0 46
33 CATCAT PopA_20 178 144 0 34
34 GGAGAG PopB_20 210 142 0 68
35 GTTTTA PopB_01 136 90 0 46
36 TGATAA PopB_02 166 108 0 58
37 GTTGAT PopB_03 148 74 0 74
38 AGATTA PopB_04 180 156 0 24
39 GTATAG PopB_05 136 106 0 30
40 TTGGGA PopB_06 166 112 0 54
41 ATATAT PopB_07 242 156 0 86
42 GATGAG PopB_08 208 152 0 56
43 GGGAAT PopB_09 198 126 0 72
44 AGTAAT PopB_10 164 120 0 44
45 GGGATA PopB_11 146 90 0 56
46 GAGAAG PopB_12 162 110 0 52
47 AGTAGA PopB_13 204 146 0 58
48 AAGGAT PopB_14 180 128 0 52
49 AGGGTA PopB_15 134 72 0 62
50 TGTTTT PopB_16 138 98 0 40
51 ATGATG PopB_17 142 100 0 42
52 GAGTTA PopB_18 160 112 0 48
53 ATGTAG PopB_19 146 104 0 42
54
55 Sequences not recorded
56 Barcode Total
57 CCGGTG 772
58 CCGCGC 750
59 CCGACA 743
60 CCGGTC 723
61 CCGCCT 695
62 CCGTGG 675
63 CCGGTT 667
64 CCGATC 579
65 CCGTGT 417
66 CCGTAT 252
67 CCGCGT 198
68 CCGCGG 150
69 CCGCAT 117
70 CCGTTC 94
71 CCGTAC 38
72 CCGGGA 32
73 CCGGAG 26
74 CCGAAC 24
75 CCGAGT 18
76 CCGTGA 10
77 CCGGGT 7
78 CCGCTT 2
79 CCGACG 2
80 CCGATT 1
81 CCGCCC 1
82 CCGGCA 1
83 CCGGCT 1
84 CCGGGG 1
85 CCGCCG 1
86 CCGTGC 1
87 CCGTAG 1
88 CCGACT 1