Mercurial > repos > iuc > stacks2_cstacks

diff test-data/shortreads/process_shortreads.out @ 5:0cd2df8af811 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
author iuc
date Thu, 14 Apr 2022 09:24:41 +0000
parents fcce77c09289
children
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line diff
--- a/test-data/shortreads/process_shortreads.out	Wed Sep 01 11:30:01 2021 +0000
+++ b/test-data/shortreads/process_shortreads.out	Thu Apr 14 09:24:41 2022 +0000
@@ -1,14 +1,17 @@
-process_shortreads v2.53, executed 2020-07-10 13:51:53 (zlib-1.2.11)
-process_shortreads -p stacks_inputs/ -i fastq -b /tmp/tmpidt4mij_/files/7/7/8/dataset_778705df-5f0c-4210-9ad6-4c43e8aacd52.dat --inline_null -o stacks_outputs
+process_shortreads v2.55, executed 2022-01-05 15:53:50 (zlib-1.2.11)
+process_shortreads -p stacks_inputs/ -i fastq -b /tmp/tmplyzlyqbv/files/4/1/2/dataset_412528b4-0c03-422a-93ff-0020f0e11824.dat --inline_null -o stacks_outputs
 File	Retained Reads	Low Quality	Ambiguous Barcodes	Trimmed Reads	Orphaned paired-end reads	Total
-R1.fastq	7000	0	0	0	0	7000
+R1_01.fastq	2176	0	0	0	0	2176
+R1_02.fastq	2175	0	0	0	0	2175
+R1_03.fastq	2176	0	0	0	0	2176
+R1_04.fastq	470	0	0	0	0	470
 
-Total Sequences	7000
+Total Sequences	6997
 Ambiguous Barcodes	0
 Low Quality	0
 Trimmed Reads	0
 Orphaned Paired-ends	0
-Retained Reads	7000
+Retained Reads	6997
 
 Barcode	Filename	Total	Retained
 ATGGGG	PopA_01	160	160
@@ -23,7 +26,7 @@
 TGTGAG	PopA_10	168	168
 ATAGTT	PopA_11	200	200
 GGAAGG	PopA_12	178	178
-TTTGTG	PopA_13	190	190
+TTTGTG	PopA_13	189	189
 TTAAAT	PopA_14	166	166
 AATAAG	PopA_15	152	152
 AAGAGG	PopA_16	174	174
@@ -43,13 +46,13 @@
 GGGAAT	PopB_09	198	198
 AGTAAT	PopB_10	164	164
 GGGATA	PopB_11	146	146
-GAGAAG	PopB_12	162	162
+GAGAAG	PopB_12	161	161
 AGTAGA	PopB_13	204	204
 AAGGAT	PopB_14	180	180
 AGGGTA	PopB_15	134	134
 TGTTTT	PopB_16	138	138
 ATGATG	PopB_17	142	142
-GAGTTA	PopB_18	160	160
+GAGTTA	PopB_18	159	159
 ATGTAG	PopB_19	146	146
 
 Sequences not recorded