Mercurial > repos > iuc > stacks2_cstacks
diff test-data/shortreads/process_shortreads.out @ 0:da351b9031de draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
| author | iuc |
|---|---|
| date | Mon, 01 Jul 2019 11:03:59 -0400 |
| parents | |
| children | fcce77c09289 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/shortreads/process_shortreads.out Mon Jul 01 11:03:59 2019 -0400 @@ -0,0 +1,56 @@ +process_shortreads v2.2, executed 2018-12-03 21:27:19 +process_shortreads -p stacks_inputs/ -i fastq -b /tmp/tmpiZT6X4/files/000/dataset_2.dat --inline_null -o stacks_outputs +File Retained Reads Low Quality Ambiguous Barcodes Trimmed Reads Orphaned paired-end reads Total +R1.fastq 7000 0 0 0 0 7000 + +Total Sequences 7000 +Ambiguous Barcodes 0 +Low Quality 0 +Trimmed Reads 0 +Orphaned Paired-ends 0 +Retained Reads 7000 + +Barcode Filename Total Retained +ATGGGG PopA_01 160 160 +GGGTAA PopA_02 146 146 +AGGAAA PopA_03 224 224 +TTTAAG PopA_04 168 168 +GGTGTG PopA_05 220 220 +TGATGT PopA_06 214 214 +GGTTGT PopA_07 182 182 +ATAAGT PopA_08 232 232 +AAGATA PopA_09 182 182 +TGTGAG PopA_10 168 168 +ATAGTT PopA_11 200 200 +GGAAGG PopA_12 178 178 +TTTGTG PopA_13 190 190 +TTAAAT PopA_14 166 166 +AATAAG PopA_15 152 152 +AAGAGG PopA_16 174 174 +TAGTGT PopA_17 242 242 +TGGAAG PopA_18 148 148 +GGGTTG PopA_19 110 110 +CATCAT PopA_20 178 178 +GGAGAG PopB_20 210 210 +GTTTTA PopB_01 136 136 +TGATAA PopB_02 166 166 +GTTGAT PopB_03 148 148 +AGATTA PopB_04 180 180 +GTATAG PopB_05 136 136 +TTGGGA PopB_06 166 166 +ATATAT PopB_07 242 242 +GATGAG PopB_08 208 208 +GGGAAT PopB_09 198 198 +AGTAAT PopB_10 164 164 +GGGATA PopB_11 146 146 +GAGAAG PopB_12 162 162 +AGTAGA PopB_13 204 204 +AAGGAT PopB_14 180 180 +AGGGTA PopB_15 134 134 +TGTTTT PopB_16 138 138 +ATGATG PopB_17 142 142 +GAGTTA PopB_18 160 160 +ATGTAG PopB_19 146 146 + +Sequences not recorded +Barcode Total