Mercurial > repos > iuc > stacks2_cstacks
view test-data/shortreads/process_shortreads.out @ 7:42d9087b4789 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4
| author | iuc |
|---|---|
| date | Mon, 23 May 2022 17:51:46 +0000 |
| parents | 0cd2df8af811 |
| children |
line wrap: on
line source
process_shortreads v2.55, executed 2022-01-05 15:53:50 (zlib-1.2.11) process_shortreads -p stacks_inputs/ -i fastq -b /tmp/tmplyzlyqbv/files/4/1/2/dataset_412528b4-0c03-422a-93ff-0020f0e11824.dat --inline_null -o stacks_outputs File Retained Reads Low Quality Ambiguous Barcodes Trimmed Reads Orphaned paired-end reads Total R1_01.fastq 2176 0 0 0 0 2176 R1_02.fastq 2175 0 0 0 0 2175 R1_03.fastq 2176 0 0 0 0 2176 R1_04.fastq 470 0 0 0 0 470 Total Sequences 6997 Ambiguous Barcodes 0 Low Quality 0 Trimmed Reads 0 Orphaned Paired-ends 0 Retained Reads 6997 Barcode Filename Total Retained ATGGGG PopA_01 160 160 GGGTAA PopA_02 146 146 AGGAAA PopA_03 224 224 TTTAAG PopA_04 168 168 GGTGTG PopA_05 220 220 TGATGT PopA_06 214 214 GGTTGT PopA_07 182 182 ATAAGT PopA_08 232 232 AAGATA PopA_09 182 182 TGTGAG PopA_10 168 168 ATAGTT PopA_11 200 200 GGAAGG PopA_12 178 178 TTTGTG PopA_13 189 189 TTAAAT PopA_14 166 166 AATAAG PopA_15 152 152 AAGAGG PopA_16 174 174 TAGTGT PopA_17 242 242 TGGAAG PopA_18 148 148 GGGTTG PopA_19 110 110 CATCAT PopA_20 178 178 GGAGAG PopB_20 210 210 GTTTTA PopB_01 136 136 TGATAA PopB_02 166 166 GTTGAT PopB_03 148 148 AGATTA PopB_04 180 180 GTATAG PopB_05 136 136 TTGGGA PopB_06 166 166 ATATAT PopB_07 242 242 GATGAG PopB_08 208 208 GGGAAT PopB_09 198 198 AGTAAT PopB_10 164 164 GGGATA PopB_11 146 146 GAGAAG PopB_12 161 161 AGTAGA PopB_13 204 204 AAGGAT PopB_14 180 180 AGGGTA PopB_15 134 134 TGTTTT PopB_16 138 138 ATGATG PopB_17 142 142 GAGTTA PopB_18 159 159 ATGTAG PopB_19 146 146 Sequences not recorded Barcode Total