Mercurial > repos > iuc > stacks2_denovomap

comparison stacks_denovomap.xml @ 3:ad5ab22ffe24 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 9a6c14bcb90c0b30c583294a993fac47504f4009"
author iuc
date Tue, 27 Apr 2021 09:33:15 +0000
parents 421c33b8bf17
children 04db7fd6b238
comparison
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2:421c33b8bf17 3:ad5ab22ffe24
117 <element name="PopA_01.matches" file="tsv2bam/PopA_01.matches.bam" ftype="bam"/> 117 <element name="PopA_01.matches" file="tsv2bam/PopA_01.matches.bam" ftype="bam"/>
118 <element name="PopA_02.matches" file="tsv2bam/PopA_02.matches.bam" ftype="bam"/> 118 <element name="PopA_02.matches" file="tsv2bam/PopA_02.matches.bam" ftype="bam"/>
119 </output_collection> 119 </output_collection>
120 <output_collection name="gstacks_out" type="list" count="2"> 120 <output_collection name="gstacks_out" type="list" count="2">
121 <element name="catalog.calls.vcf" file="gstacks/catalog.calls.vcf" ftype="vcf" lines_diff="4"/> 121 <element name="catalog.calls.vcf" file="gstacks/catalog.calls.vcf" ftype="vcf" lines_diff="4"/>
122 <element name="catalog.fa.gz" file="gstacks/catalog.fa.gz" ftype="fasta.gz" compare="sim_size" delta_frac="0.01"/> 122 <element name="catalog.fa.gz" file="gstacks/catalog.fa.gz" ftype="fasta.gz" compare="diff"/>
123 </output_collection> 123 </output_collection>
124 <output ftype="tabular" name="out_haplotypes" value="populations/populations.haplotypes.tsv"/> 124 <output ftype="tabular" name="out_haplotypes" value="populations/populations.haplotypes.tsv"/>
125 <output ftype="tabular" name="out_hapstats" value="populations/populations.hapstats.tsv" compare="sim_size" delta_frac="0.01"/> 125 <output ftype="tabular" name="out_hapstats" value="populations/populations.hapstats.tsv" compare="diff"/>
126 <output ftype="txt" name="out_populations_log_distribs" value="populations/populations.log.distribs"/> 126 <output ftype="txt" name="out_populations_log_distribs" value="populations/populations.log.distribs"/>
127 <output ftype="tabular" name="out_sumstats_sum" value="populations/populations.sumstats_summary.tsv"/> 127 <output ftype="tabular" name="out_sumstats_sum" value="populations/populations.sumstats_summary.tsv"/>
128 <output ftype="tabular" name="out_sumstats" value="populations/populations.sumstats.tsv"/> 128 <output ftype="tabular" name="out_sumstats" value="populations/populations.sumstats.tsv"/>
129 </test> 129 </test>
130 <!-- SE input as multi selection, defaults testing against the output of the pipeline components --> 130 <!-- SE input as multi selection, defaults testing against the output of the pipeline components -->