Mercurial > repos > iuc > stacks2_denovomap

diff stacks_denovomap.xml @ 5:04db7fd6b238 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
author iuc
date Thu, 14 Apr 2022 09:20:20 +0000
parents ad5ab22ffe24
children 89eb29319bf4
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--- a/stacks_denovomap.xml	Wed Sep 01 11:24:18 2021 +0000
+++ b/stacks_denovomap.xml	Thu Apr 14 09:20:20 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="stacks2_denovomap" name="Stacks2: de novo map" profile="@PROFILE@" version="@STACKS_VERSION@+galaxy@WRAPPER_VERSION@">
+<tool id="stacks2_denovomap" name="Stacks2: de novo map" profile="@PROFILE@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>the Stacks pipeline without a reference genome (denovo_map.pl)</description>
     <macros>
         <import>macros.xml</import>
@@ -42,7 +42,7 @@
     ]]></command>
 
     <inputs>
-        <expand macro="fastq_input"/>
+        <expand macro="fastq_input" multiple="true" listtype="list:paired"/>
         <param argument="--popmap" type="data" optional="true" format="tabular,txt" label="Population map"/>
         <section name="assembly_options" title="Assembly options" expanded="true">
             <param name="M" argument="-M" type="integer" value="2" label="Number of mismatches allowed between loci when processing a single individual" help="used in ustacks"/>