Mercurial > repos > iuc > stacks2_denovomap
diff test-data/denovo_map/denovo_map.log @ 2:421c33b8bf17 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f55e2407891a3c1f73f14a77b7ddadcd6f5eb1f8"
| author | iuc |
|---|---|
| date | Wed, 15 Jul 2020 17:25:36 -0400 |
| parents | b9822370f843 |
| children | 405a212b32ab |
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--- a/test-data/denovo_map/denovo_map.log Mon Sep 30 14:17:15 2019 -0400 +++ b/test-data/denovo_map/denovo_map.log Wed Jul 15 17:25:36 2020 -0400 @@ -1,5 +1,5 @@ -denovo_map.pl version 2.4 started at 2019-06-18 10:34:45 -/home/berntm/miniconda3/envs/mulled-v1-2b57e7596f85ebb3b321e6c9681e8fd9250523a80d97945c46ac7743359454e7/bin/denovo_map.pl --samples demultiplexed --popmap denovo_map/popmap_cstacks.tsv -o stacks_outputs --paired +denovo_map.pl version 2.52 started at 2020-03-16 15:39:40 +/home/berntm/miniconda3/envs/__stacks@2.52/bin/denovo_map.pl --samples demultiplexed --popmap denovo_map/popmap_cstacks.tsv -o stacks_outputs --paired ustacks ========== @@ -110,7 +110,7 @@ cstacks ========== -cstacks -P stacks_outputs -M denovo_map/popmap_cstacks.tsv +cstacks -M denovo_map/popmap_cstacks.tsv -P stacks_outputs cstacks parameters selected: Loci matched based on sequence identity. @@ -279,8 +279,7 @@ Working on 1 group(s) of populations: defaultgrp: 1 -Genotyping markers will be written to 'stacks_outputs/populations.markers.tsv' -Raw Genotypes/Haplotypes will be written to 'stacks_outputs/populations.haplotypes.tsv' +Raw haplotypes will be written to 'stacks_outputs/populations.haplotypes.tsv' Population-level summary statistics will be written to 'stacks_outputs/populations.sumstats.tsv' Population-level haplotype summary statistics will be written to 'stacks_outputs/populations.hapstats.tsv' @@ -306,4 +305,4 @@ Populations is done. denovo_map.pl is done. -denovo_map.pl completed at 2019-06-18 10:34:45 +denovo_map.pl completed at 2020-03-16 15:39:40