Mercurial > repos > iuc > stacks2_denovomap

view test-data/tsv2bam/tsv2bam.log @ 2:421c33b8bf17 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f55e2407891a3c1f73f14a77b7ddadcd6f5eb1f8"
author iuc
date Wed, 15 Jul 2020 17:25:36 -0400
parents b9822370f843
children 405a212b32ab
line wrap: on
line source

tsv2bam v2.52, executed 2020-03-16 15:39:40 (zlib-1.2.11)
tsv2bam -P stacks_outputs -M denovo_map/popmap_cstacks.tsv -R demultiplexed/
Configuration for this run:
  Stacks directory: 'stacks_outputs/'
  Population map: 'denovo_map/popmap_cstacks.tsv'
  Num. samples: 2
  Paired-end reads directory: 'demultiplexed/'

Paired-end reads files found, e.g. 'demultiplexed/PopA_01.2.fq'.
Loading the catalog...
Processing sample 'PopA_01'...
Processing sample 'PopA_02'...

Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; found a paired-end read for 66 (100.0%) of the assembled forward reads; wrote 132 records.
Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; found a paired-end read for 60 (100.0%) of the assembled forward reads; wrote 120 records.

tsv2bam is done.