Mercurial > repos > iuc > stacks2_gstacks

comparison stacks_gstacks.xml @ 3:eb784fa07f80 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 9a6c14bcb90c0b30c583294a993fac47504f4009"
author iuc
date Tue, 27 Apr 2021 09:31:18 +0000
parents 1d839ead7ad3
children 7370bb65bad4
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2:1d839ead7ad3 3:eb784fa07f80
201 <param name="add_log_distribs" value="yes"/> 201 <param name="add_log_distribs" value="yes"/>
202 <output name="output_log" ftype="txt" file="gstacks/gstacks.log" lines_diff="8"/> 202 <output name="output_log" ftype="txt" file="gstacks/gstacks.log" lines_diff="8"/>
203 <output name="distribs" ftype="txt" file="gstacks/gstacks.log.distribs" compare="sim_size" delta="10"/> 203 <output name="distribs" ftype="txt" file="gstacks/gstacks.log.distribs" compare="sim_size" delta="10"/>
204 <output_collection name="gstacks_out" type="list" count="2"> 204 <output_collection name="gstacks_out" type="list" count="2">
205 <element name="catalog.calls.vcf" file="gstacks/catalog.calls.vcf" ftype="vcf" lines_diff="4"/> 205 <element name="catalog.calls.vcf" file="gstacks/catalog.calls.vcf" ftype="vcf" lines_diff="4"/>
206 <element name="catalog.fa.gz" file="gstacks/catalog.fa.gz" ftype="fasta.gz" compare="sim_size" delta_frac="0.01"/> 206 <element name="catalog.fa.gz" file="gstacks/catalog.fa.gz" ftype="fasta.gz" compare="diff"/>
207 </output_collection> 207 </output_collection>
208 </test> 208 </test>
209 <!-- denovomode, w popmap, write alignments --> 209 <!-- denovomode, w popmap, write alignments -->
210 <test expect_num_outputs="3"> 210 <test expect_num_outputs="3">
211 <param name="input_bam" ftype="bam" value="tsv2bam/PopA_01.matches.bam,tsv2bam/PopA_02.matches.bam"/> 211 <param name="input_bam" ftype="bam" value="tsv2bam/PopA_01.matches.bam,tsv2bam/PopA_02.matches.bam"/>