Mercurial > repos > iuc > stacks2_gstacks
comparison test-data/procrad/process_radtags.out @ 5:f6e91108b7b1 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
author | iuc |
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date | Thu, 14 Apr 2022 09:32:27 +0000 |
parents | d35cb34f2b85 |
children |
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4:7370bb65bad4 | 5:f6e91108b7b1 |
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1 process_radtags v2.2, executed 2018-11-23 13:34:27 | 1 process_radtags v2.55, executed 2022-01-04 19:49:25 (zlib-1.2.11) |
2 process_radtags -p stacks_inputs/ -i fastq -b /tmp/tmp2_xu5h/files/000/dataset_2.dat --inline_null -e ecoRI -o stacks_outputs | 2 process_radtags -p stacks_inputs/ -i fastq -b /tmp/tmp1omqb2_d/files/2/a/2/dataset_2a2dd860-d29c-4b1a-9d82-80c8f91d4013.dat --inline_null -o stacks_outputs -e ecoRI |
3 File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total | 3 File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total |
4 R1.fastq 2222 0 0 4778 7000 | 4 R1_01.fastq 1375 0 0 801 2176 |
5 R1_02.fastq 97 0 0 2078 2175 | |
6 R1_03.fastq 749 0 0 1427 2176 | |
7 R1_04.fastq 0 0 0 470 470 | |
5 | 8 |
6 Total Sequences 7000 | 9 Total Sequences 6997 |
7 Barcode Not Found 0 | 10 Barcode Not Found 0 |
8 Low Quality 0 | 11 Low Quality 0 |
9 RAD Cutsite Not Found 4778 | 12 RAD Cutsite Not Found 4776 |
10 Retained Reads 2222 | 13 Retained Reads 2221 |
11 | 14 |
12 Barcode Filename Total NoRadTag LowQuality Retained | 15 Barcode Filename Total NoRadTag LowQuality Retained |
13 ATGGGG PopA_01 160 94 0 66 | 16 ATGGGG PopA_01 160 94 0 66 |
14 GGGTAA PopA_02 146 86 0 60 | 17 GGGTAA PopA_02 146 86 0 60 |
15 AGGAAA PopA_03 224 132 0 92 | 18 AGGAAA PopA_03 224 132 0 92 |
20 ATAAGT PopA_08 232 164 0 68 | 23 ATAAGT PopA_08 232 164 0 68 |
21 AAGATA PopA_09 182 134 0 48 | 24 AAGATA PopA_09 182 134 0 48 |
22 TGTGAG PopA_10 168 128 0 40 | 25 TGTGAG PopA_10 168 128 0 40 |
23 ATAGTT PopA_11 200 132 0 68 | 26 ATAGTT PopA_11 200 132 0 68 |
24 GGAAGG PopA_12 178 136 0 42 | 27 GGAAGG PopA_12 178 136 0 42 |
25 TTTGTG PopA_13 190 152 0 38 | 28 TTTGTG PopA_13 189 151 0 38 |
26 TTAAAT PopA_14 166 96 0 70 | 29 TTAAAT PopA_14 166 96 0 70 |
27 AATAAG PopA_15 152 74 0 78 | 30 AATAAG PopA_15 152 74 0 78 |
28 AAGAGG PopA_16 174 112 0 62 | 31 AAGAGG PopA_16 174 112 0 62 |
29 TAGTGT PopA_17 242 146 0 96 | 32 TAGTGT PopA_17 242 146 0 96 |
30 TGGAAG PopA_18 148 98 0 50 | 33 TGGAAG PopA_18 148 98 0 50 |
40 ATATAT PopB_07 242 156 0 86 | 43 ATATAT PopB_07 242 156 0 86 |
41 GATGAG PopB_08 208 152 0 56 | 44 GATGAG PopB_08 208 152 0 56 |
42 GGGAAT PopB_09 198 126 0 72 | 45 GGGAAT PopB_09 198 126 0 72 |
43 AGTAAT PopB_10 164 120 0 44 | 46 AGTAAT PopB_10 164 120 0 44 |
44 GGGATA PopB_11 146 90 0 56 | 47 GGGATA PopB_11 146 90 0 56 |
45 GAGAAG PopB_12 162 110 0 52 | 48 GAGAAG PopB_12 161 110 0 51 |
46 AGTAGA PopB_13 204 146 0 58 | 49 AGTAGA PopB_13 204 146 0 58 |
47 AAGGAT PopB_14 180 128 0 52 | 50 AAGGAT PopB_14 180 128 0 52 |
48 AGGGTA PopB_15 134 72 0 62 | 51 AGGGTA PopB_15 134 72 0 62 |
49 TGTTTT PopB_16 138 98 0 40 | 52 TGTTTT PopB_16 138 98 0 40 |
50 ATGATG PopB_17 142 100 0 42 | 53 ATGATG PopB_17 142 100 0 42 |
51 GAGTTA PopB_18 160 112 0 48 | 54 GAGTTA PopB_18 159 111 0 48 |
52 ATGTAG PopB_19 146 104 0 42 | 55 ATGTAG PopB_19 146 104 0 42 |
53 | 56 |
54 Sequences not recorded | 57 Sequences not recorded |
55 Barcode Total | 58 Barcode Total |