Mercurial > repos > iuc > stacks2_gstacks
view test-data/refmap/populations.log.distribs @ 2:1d839ead7ad3 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f55e2407891a3c1f73f14a77b7ddadcd6f5eb1f8"
author | iuc |
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date | Wed, 15 Jul 2020 17:24:38 -0400 |
parents | d35cb34f2b85 |
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# Note: Individual distributions can be extracted using the `stacks-dist-extract` utility. # e.g. `stacks-dist-extract populations.log.distribs dist_name` BEGIN batch_progress Contig_95: analyzed 1 loci; filtered 0 loci; 1 loci seen. 94 genomic sites, of which 0 were covered by multiple loci (0.0%). Contig_1381: analyzed 2 loci; filtered 0 loci; 2 loci seen. 94 genomic sites, of which 94 were covered by multiple loci (100.0%). Contig_2103: analyzed 2 loci; filtered 0 loci; 2 loci seen. 94 genomic sites, of which 94 were covered by multiple loci (100.0%). Contig_2644: analyzed 2 loci; filtered 0 loci; 2 loci seen. 94 genomic sites, of which 94 were covered by multiple loci (100.0%). Contig_3015: analyzed 2 loci; filtered 0 loci; 2 loci seen. 94 genomic sites, of which 94 were covered by multiple loci (100.0%). Contig_3253: analyzed 2 loci; filtered 0 loci; 2 loci seen. 94 genomic sites, of which 94 were covered by multiple loci (100.0%). Contig_3569: analyzed 2 loci; filtered 0 loci; 2 loci seen. 94 genomic sites, of which 94 were covered by multiple loci (100.0%). END batch_progress BEGIN samples_per_loc_prefilters # Distribution of valid samples matched to a catalog locus prior to filtering. n_samples n_loci 2 13 END samples_per_loc_prefilters BEGIN missing_samples_per_loc_prefilters # Distribution of missing samples for each catalog locus prior to filtering. # Absent samples at locus Count 0 13 END missing_samples_per_loc_prefilters BEGIN snps_per_loc_prefilters # Distribution of the number of SNPs per catalog locus prior to filtering. n_snps n_loci 0 10 2 3 END snps_per_loc_prefilters BEGIN samples_per_loc_postfilters # Distribution of valid samples matched to a catalog locus after filtering. n_samples n_loci 2 13 END samples_per_loc_postfilters BEGIN missing_samples_per_loc_postfilters # Distribution of missing samples for each catalog locus after filtering. # Absent samples at locus Count 0 13 END missing_samples_per_loc_postfilters BEGIN snps_per_loc_postfilters # Distribution of the number of SNPs per catalog locus (after filtering). n_snps n_loci 0 10 2 3 END snps_per_loc_postfilters