Mercurial > repos > iuc > stacks2_kmerfilter

diff stacks_kmerfilter.xml @ 5:3d70c2996730 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
author iuc
date Thu, 14 Apr 2022 09:27:58 +0000
parents 1544278c272e
children
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--- a/stacks_kmerfilter.xml	Wed Sep 01 11:30:57 2021 +0000
+++ b/stacks_kmerfilter.xml	Thu Apr 14 09:27:58 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="stacks2_kmerfilter" name="Stacks2: kmer filter" profile="@PROFILE@" version="@STACKS_VERSION@+galaxy@WRAPPER_VERSION@">
+<tool id="stacks2_kmerfilter" name="Stacks2: kmer filter" profile="@PROFILE@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
 <description>Identify PCR clones</description>
     <macros>
         <import>macros.xml</import>
@@ -81,7 +81,7 @@
 #end if
     ]]></command>
     <inputs>
-        <expand macro="fastq_input_bc"/>
+        <expand macro="fastq_input"/>
         <param name="capture" type="boolean" checked="false" truevalue="-D" falsevalue="" argument="-D" label="Capture discarded reads to a file"/>
         <section name="options_filtering" title="Filtering options" expanded="False">
             <param argument="--rare" type="boolean" checked="false" truevalue="--rare" falsevalue="" label="Turn on filtering based on rare k-mers"/>