Mercurial > repos > iuc > stacks2_kmerfilter
diff test-data/gentest.sh @ 2:8a55d29c8fcf draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f55e2407891a3c1f73f14a77b7ddadcd6f5eb1f8"
author | iuc |
---|---|
date | Thu, 16 Jul 2020 07:28:45 -0400 |
parents | b2e3553e1be2 |
children | c9b77ced9a78 |
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--- a/test-data/gentest.sh Mon Sep 30 14:18:47 2019 -0400 +++ b/test-data/gentest.sh Thu Jul 16 07:28:45 2020 -0400 @@ -1,7 +1,11 @@ #!/usr/bin/env bash +eval "$(conda shell.bash hook)" +conda activate __stacks@2.52 + + + mkdir stacks_outputs - denovo_map.pl --samples demultiplexed --popmap denovo_map/popmap_cstacks.tsv -o stacks_outputs --paired && gunzip -c stacks_outputs/catalog.calls > stacks_outputs/catalog.calls.vcf rm stacks_outputs/catalog.calls