Mercurial > repos > iuc > stacks2_populations

comparison test-data/populations/populations.log @ 3:b242deb58952 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f55e2407891a3c1f73f14a77b7ddadcd6f5eb1f8"
author iuc
date Thu, 16 Jul 2020 07:32:42 -0400
parents 6fba323a242d
children 7b881f5f5ad5
comparison
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2:38942a7e3801 3:b242deb58952
1 populations v2.4, executed 2019-06-18 10:34:45 (zlib-1.2.11) 1 populations v2.52, executed 2020-03-16 15:39:40 (zlib-1.2.11)
2 populations -P stacks_outputs -M denovo_map/popmap_cstacks.tsv 2 populations -P stacks_outputs -M denovo_map/popmap_cstacks.tsv
3 Locus/sample distributions will be written to 'stacks_outputs/populations.log.distribs'. 3 Locus/sample distributions will be written to 'stacks_outputs/populations.log.distribs'.
4 populations parameters selected: 4 populations parameters selected:
5 Percent samples limit per population: 0 5 Percent samples limit per population: 0
6 Locus Population limit: 1 6 Locus Population limit: 1
18 Working on 1 population(s): 18 Working on 1 population(s):
19 1: PopA_01, PopA_02 19 1: PopA_01, PopA_02
20 Working on 1 group(s) of populations: 20 Working on 1 group(s) of populations:
21 defaultgrp: 1 21 defaultgrp: 1
22 22
23 Genotyping markers will be written to 'stacks_outputs/populations.markers.tsv' 23 Raw haplotypes will be written to 'stacks_outputs/populations.haplotypes.tsv'
24 Raw Genotypes/Haplotypes will be written to 'stacks_outputs/populations.haplotypes.tsv'
25 Population-level summary statistics will be written to 'stacks_outputs/populations.sumstats.tsv' 24 Population-level summary statistics will be written to 'stacks_outputs/populations.sumstats.tsv'
26 Population-level haplotype summary statistics will be written to 'stacks_outputs/populations.hapstats.tsv' 25 Population-level haplotype summary statistics will be written to 'stacks_outputs/populations.hapstats.tsv'
27 26
28 Processing data in batches: 27 Processing data in batches:
29 * load a batch of catalog loci and apply filters 28 * load a batch of catalog loci and apply filters