Mercurial > repos > iuc > stacks2_refmap

diff stacks_refmap.xml @ 3:4f65e343ecdf draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 9a6c14bcb90c0b30c583294a993fac47504f4009"
author iuc
date Tue, 27 Apr 2021 09:35:13 +0000
parents 6dafad990086
children 887e0991eb24
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--- a/stacks_refmap.xml	Thu Jul 16 07:26:37 2020 -0400
+++ b/stacks_refmap.xml	Tue Apr 27 09:35:13 2021 +0000
@@ -57,7 +57,7 @@
             <output ftype="txt" name="output_log"><assert_contents><has_text text="ref_map.pl is done."/></assert_contents></output>
             <output_collection name="gstacks_out" type="list" count="2">
                 <element name="catalog.calls.vcf" file="refmap/catalog.calls.vcf" ftype="vcf" lines_diff="4"/>
-                <element name="catalog.fa.gz" file="refmap/catalog.fa.gz" ftype="fasta.gz" compare="sim_size" delta_frac="0.01"/>
+                <element name="catalog.fa.gz" file="refmap/catalog.fa.gz" ftype="fasta.gz" compare="diff"/>
             </output_collection>
             <output ftype="tabular" name="out_haplotypes" value="refmap/populations.haplotypes.tsv"/>
             <output ftype="tabular" name="out_hapstats" value="refmap/populations.hapstats.tsv"/>