Mercurial > repos > iuc > stacks2_refmap
diff test-data/gstacks/gstacks.log.distribs @ 2:6dafad990086 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f55e2407891a3c1f73f14a77b7ddadcd6f5eb1f8"
| author | iuc |
|---|---|
| date | Thu, 16 Jul 2020 07:26:37 -0400 |
| parents | 45385ba40a75 |
| children | 5e10f396979e |
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--- a/test-data/gstacks/gstacks.log.distribs Mon Sep 30 14:15:21 2019 -0400 +++ b/test-data/gstacks/gstacks.log.distribs Thu Jul 16 07:26:37 2020 -0400 @@ -19,25 +19,25 @@ Num. threads: 1 Parallel time: 0.0 Average thread time spent: - 0.0 reading (3.1%) - 0.0 processing (95.2%) - 0.0 pre-alignments block (72.2%) - 0.0 reformatting fw-reads (0.1%) - 0.0 assembling (22.2%) - 0.0 initializing alignments (5.4%) - 0.0 aligning (42.9%) - 0.0 merging read pairs (1.5%) - 0.0 post-alignments block (21.2%) + 0.0 reading (3.0%) + 0.0 processing (95.7%) + 0.0 pre-alignments block (74.4%) + 0.0 reformatting fw-reads (0.2%) + 0.0 assembling (27.3%) + 0.0 initializing alignments (8.7%) + 0.0 aligning (36.6%) + 0.0 merging read pairs (1.6%) + 0.0 post-alignments block (19.8%) 0.0 filtering reads (0.0%) - 0.0 counting nucleotides (3.5%) - 0.0 genotyping (1.9%) - 0.0 haplotyping (1.0%) + 0.0 counting nucleotides (3.2%) + 0.0 genotyping (1.5%) + 0.0 haplotyping (0.9%) 0.0 computing consensus (0.1%) 0.0 building_fa (0.1%) - 0.0 building_vcf (14.6%) - 0.0 writing_fa (0.1%) - 0.0 writing_vcf (1.3%) - 0.0 clocking (0.2%) -Total time spent writing vcf: 0.0 (1.3%) + 0.0 building_vcf (14.0%) + 0.0 writing_fa (0.0%) + 0.0 writing_vcf (0.9%) + 0.0 clocking (0.1%) +Total time spent writing vcf: 0.0 (0.8%) VCFwrite block size: mean=1.0(n=3); max=1 END clockings