Mercurial > repos > iuc > stacks2_shortreads
comparison test-data/gstacks/gstacks.log.distribs @ 2:43e3eeb2e0ec draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f55e2407891a3c1f73f14a77b7ddadcd6f5eb1f8"
author | iuc |
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date | Wed, 15 Jul 2020 17:42:30 -0400 |
parents | ad7a60726fc3 |
children | 17d39bf0a63a |
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1:1974fee35ca7 | 2:43e3eeb2e0ec |
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17 | 17 |
18 BEGIN clockings | 18 BEGIN clockings |
19 Num. threads: 1 | 19 Num. threads: 1 |
20 Parallel time: 0.0 | 20 Parallel time: 0.0 |
21 Average thread time spent: | 21 Average thread time spent: |
22 0.0 reading (3.1%) | 22 0.0 reading (3.0%) |
23 0.0 processing (95.2%) | 23 0.0 processing (95.7%) |
24 0.0 pre-alignments block (72.2%) | 24 0.0 pre-alignments block (74.4%) |
25 0.0 reformatting fw-reads (0.1%) | 25 0.0 reformatting fw-reads (0.2%) |
26 0.0 assembling (22.2%) | 26 0.0 assembling (27.3%) |
27 0.0 initializing alignments (5.4%) | 27 0.0 initializing alignments (8.7%) |
28 0.0 aligning (42.9%) | 28 0.0 aligning (36.6%) |
29 0.0 merging read pairs (1.5%) | 29 0.0 merging read pairs (1.6%) |
30 0.0 post-alignments block (21.2%) | 30 0.0 post-alignments block (19.8%) |
31 0.0 filtering reads (0.0%) | 31 0.0 filtering reads (0.0%) |
32 0.0 counting nucleotides (3.5%) | 32 0.0 counting nucleotides (3.2%) |
33 0.0 genotyping (1.9%) | 33 0.0 genotyping (1.5%) |
34 0.0 haplotyping (1.0%) | 34 0.0 haplotyping (0.9%) |
35 0.0 computing consensus (0.1%) | 35 0.0 computing consensus (0.1%) |
36 0.0 building_fa (0.1%) | 36 0.0 building_fa (0.1%) |
37 0.0 building_vcf (14.6%) | 37 0.0 building_vcf (14.0%) |
38 0.0 writing_fa (0.1%) | 38 0.0 writing_fa (0.0%) |
39 0.0 writing_vcf (1.3%) | 39 0.0 writing_vcf (0.9%) |
40 0.0 clocking (0.2%) | 40 0.0 clocking (0.1%) |
41 Total time spent writing vcf: 0.0 (1.3%) | 41 Total time spent writing vcf: 0.0 (0.8%) |
42 VCFwrite block size: mean=1.0(n=3); max=1 | 42 VCFwrite block size: mean=1.0(n=3); max=1 |
43 END clockings | 43 END clockings |