Mercurial > repos > iuc > stacks2_shortreads

comparison macros.xml @ 7:c287418eb288 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4
author iuc
date Mon, 23 May 2022 17:48:31 +0000
parents 97575d01f06b
children
comparison
equal deleted inserted replaced
6:97575d01f06b 7:c287418eb288
8 <yield/> 8 <yield/>
9 </requirements> 9 </requirements>
10 </xml> 10 </xml>
11 11
12 <token name="@TOOL_VERSION@">2.55</token> 12 <token name="@TOOL_VERSION@">2.55</token>
13 <token name="@VERSION_SUFFIX@">3</token> 13 <token name="@VERSION_SUFFIX@">4</token>
14 <token name="@PROFILE@">20.05</token> 14 <token name="@PROFILE@">20.05</token>
15 15
16 <xml name="citation"> 16 <xml name="citation">
17 <citations> 17 <citations>
18 <citation type="doi">10.1111/mec.12354</citation> 18 <citation type="doi">10.1111/mec.12354</citation>
472 <filter>fstats_conditional['fstats']=='yes' or kernel_smoothing['options_kernel']['kernel'] in ['--k', '--smooth-fstats']</filter> 472 <filter>fstats_conditional['fstats']=='yes' or kernel_smoothing['options_kernel']['kernel'] in ['--k', '--smooth-fstats']</filter>
473 </data> 473 </data>
474 <data format="tabular" name="out_fststats_sum" label="${tool.name} on ${on_string} Summary of Fst statistics" from_work_dir="stacks_outputs/populations.fst_summary.tsv"> 474 <data format="tabular" name="out_fststats_sum" label="${tool.name} on ${on_string} Summary of Fst statistics" from_work_dir="stacks_outputs/populations.fst_summary.tsv">
475 <filter>fstats_conditional['fstats']=='yes' or kernel_smoothing['options_kernel']['kernel'] in ['--k', '--smooth-fstats']</filter> 475 <filter>fstats_conditional['fstats']=='yes' or kernel_smoothing['options_kernel']['kernel'] in ['--k', '--smooth-fstats']</filter>
476 </data> 476 </data>
477 <collection type="list" name="out_fstats_popcompare" label="${tool.name} on ${on_string} Fst statistics between populations">
478 <discover_datasets pattern="populations\.fst_(?P&lt;designation&gt;[\w]+-[\w]+)\.tsv" format="tabular" directory="stacks_outputs"/>
479 <filter>fstats_conditional['fstats']=='yes' or kernel_smoothing['options_kernel']['kernel'] in ['--k', '--smooth-fstats']</filter>
480 </collection>
477 481
478 <!-- fasta_loci populations.loci.fa 482 <!-- fasta_loci populations.loci.fa
479 fasta_samples populations.samples.fa 483 fasta_samples populations.samples.fa
480 fasta_samples_raw populations.samples-raw.fa--> 484 fasta_samples_raw populations.samples-raw.fa-->
481 <data format="tabular" name="out_fasta_strict" label="${tool.name} on ${on_string} per-locus consensus sequences" from_work_dir="stacks_outputs/populations.loci.fa"> 485 <data format="tabular" name="out_fasta_strict" label="${tool.name} on ${on_string} per-locus consensus sequences" from_work_dir="stacks_outputs/populations.loci.fa">