Mercurial > repos > iuc > stacks2_shortreads

diff macros.xml @ 4:17d39bf0a63a draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 75f83e7b16127aecc68a58df2cb75062f2a9296a"
author iuc
date Wed, 01 Sep 2021 11:23:22 +0000
parents c5d7050e4ad7
children 4e280b27a831
line wrap: on
line diff
--- a/macros.xml	Tue Apr 27 09:29:22 2021 +0000
+++ b/macros.xml	Wed Sep 01 11:23:22 2021 +0000
@@ -10,8 +10,8 @@
     </xml>
 
     <token name="@STACKS_VERSION@">2.55</token>
-    <token name="@WRAPPER_VERSION@">0</token>
-    <token name="@PROFILE@">20.01</token>
+    <token name="@WRAPPER_VERSION@">1</token>
+    <token name="@PROFILE@">20.05</token>
 
     <xml name="citation">
         <citations>
@@ -424,11 +424,11 @@
             <filter>add_log_distribs</filter>
         </data>
         <collection name="gstacks_alns_out" type="list" label="${tool.name} @TOOLADD@ on ${on_string} Read alignments">
-            <discover_datasets pattern="(?P&lt;name&gt;.*).alns.bam$" ext="bam" directory="stacks_outputs"/>
-            <filter>mode_cond['mode_select'] == 'denovo' and mode_cond['advanced_cond']['advanced_select'] == "yes" and mode_cond['advanced_cond']['write_alignments'] != "" and popmap!=None</filter>
+            <discover_datasets pattern="(?P&lt;name&gt;.*).alns.bam$" format="bam" directory="stacks_outputs"/>
+            <filter>mode_cond['mode_select'] == 'denovo' and mode_cond['advanced_cond']['advanced_select'] == "yes" and mode_cond['advanced_cond']['write_alignments'] and popmap!=None</filter>
         </collection>
         <data name="gstacks_aln_out" format="bam" label="${tool.name} @TOOLADD@ on ${on_string} Read alignment" from_work_dir="stacks_outputs/alignments.bam">
-            <filter>mode_cond['mode_select'] == 'denovo' and mode_cond['advanced_cond']['advanced_select'] == "yes" and mode_cond['advanced_cond']['write_alignments'] != "" and popmap==None</filter>
+            <filter>mode_cond['mode_select'] == 'denovo' and mode_cond['advanced_cond']['advanced_select'] == "yes" and mode_cond['advanced_cond']['write_alignments'] and popmap==None</filter>
         </data>
     </xml>
     <xml name="gstacks_outputs_macro" token_tooladd="">