Mercurial > repos > iuc > stacks2_shortreads

diff test-data/gentest.sh @ 2:43e3eeb2e0ec draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f55e2407891a3c1f73f14a77b7ddadcd6f5eb1f8"
author: iuc
date: Wed, 15 Jul 2020 17:42:30 -0400
parents: ad7a60726fc3
children: 17d39bf0a63a
--- a/test-data/gentest.sh	Mon Sep 30 14:16:13 2019 -0400
+++ b/test-data/gentest.sh	Wed Jul 15 17:42:30 2020 -0400
@@ -1,7 +1,11 @@
 #!/usr/bin/env bash
+eval "$(conda shell.bash hook)"
+conda activate __stacks@2.52
+
+
+
 
 mkdir stacks_outputs
-
 denovo_map.pl --samples demultiplexed --popmap denovo_map/popmap_cstacks.tsv -o stacks_outputs --paired  && 
 gunzip -c stacks_outputs/catalog.calls > stacks_outputs/catalog.calls.vcf
 rm stacks_outputs/catalog.calls