Mercurial > repos > iuc > stacks2_shortreads

view test-data/stacks_outputs/tsv2bam.log @ 1:1974fee35ca7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
author iuc
date Mon, 30 Sep 2019 14:16:13 -0400
parents ad7a60726fc3
children
line wrap: on
line source

tsv2bam v2.4, executed 2019-06-18 10:34:45 (zlib-1.2.11)
tsv2bam -P stacks_outputs -M denovo_map/popmap_cstacks.tsv -R demultiplexed/
Configuration for this run:
  Stacks directory: 'stacks_outputs/'
  Population map: 'denovo_map/popmap_cstacks.tsv'
  Num. samples: 2
  Paired-end reads directory: 'demultiplexed/'

Paired-end reads files found, e.g. 'demultiplexed/PopA_01.2.fq'.
Loading the catalog...
Processing sample 'PopA_01'...
Processing sample 'PopA_02'...

Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; found a paired-end read for 66 (100.0%) of the assembled forward reads; wrote 132 records.
Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; found a paired-end read for 60 (100.0%) of the assembled forward reads; wrote 120 records.

tsv2bam is done.