Mercurial > repos > iuc > stacks2_shortreads
view test-data/populations/populations.haps.vcf @ 2:43e3eeb2e0ec draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f55e2407891a3c1f73f14a77b7ddadcd6f5eb1f8"
| author | iuc |
|---|---|
| date | Wed, 15 Jul 2020 17:42:30 -0400 |
| parents | ad7a60726fc3 |
| children |
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##fileformat=VCFv4.2 ##fileDate=20190617 ##source="Stacks v2.4" ##INFO=<ID=AD,Number=R,Type=Integer,Description="Total Depth for Each Allele"> ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency"> ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data"> ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allele Depth"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality"> ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood"> ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##INFO=<ID=loc_strand,Number=1,Type=Character,Description="Genomic strand the corresponding Stacks locus aligns on"> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PopA_01 PopA_02 1 1 . AC CA . PASS snp_columns=34,89 GT 0/1 0/1 2 1 . CG TT . PASS snp_columns=145,157 GT 0/1 0/1 3 1 . GG AA . PASS snp_columns=163,182 GT 0/0 0/1