Mercurial > repos > iuc > stacks2_sstacks
comparison test-data/shortreads/process_shortreads.out @ 5:09b8edb56d80 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
author | iuc |
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date | Thu, 14 Apr 2022 09:22:31 +0000 |
parents | 0b8c84a7fdb5 |
children |
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4:d9bf483266a1 | 5:09b8edb56d80 |
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1 process_shortreads v2.53, executed 2020-07-10 13:51:53 (zlib-1.2.11) | 1 process_shortreads v2.55, executed 2022-01-05 15:53:50 (zlib-1.2.11) |
2 process_shortreads -p stacks_inputs/ -i fastq -b /tmp/tmpidt4mij_/files/7/7/8/dataset_778705df-5f0c-4210-9ad6-4c43e8aacd52.dat --inline_null -o stacks_outputs | 2 process_shortreads -p stacks_inputs/ -i fastq -b /tmp/tmplyzlyqbv/files/4/1/2/dataset_412528b4-0c03-422a-93ff-0020f0e11824.dat --inline_null -o stacks_outputs |
3 File Retained Reads Low Quality Ambiguous Barcodes Trimmed Reads Orphaned paired-end reads Total | 3 File Retained Reads Low Quality Ambiguous Barcodes Trimmed Reads Orphaned paired-end reads Total |
4 R1.fastq 7000 0 0 0 0 7000 | 4 R1_01.fastq 2176 0 0 0 0 2176 |
5 R1_02.fastq 2175 0 0 0 0 2175 | |
6 R1_03.fastq 2176 0 0 0 0 2176 | |
7 R1_04.fastq 470 0 0 0 0 470 | |
5 | 8 |
6 Total Sequences 7000 | 9 Total Sequences 6997 |
7 Ambiguous Barcodes 0 | 10 Ambiguous Barcodes 0 |
8 Low Quality 0 | 11 Low Quality 0 |
9 Trimmed Reads 0 | 12 Trimmed Reads 0 |
10 Orphaned Paired-ends 0 | 13 Orphaned Paired-ends 0 |
11 Retained Reads 7000 | 14 Retained Reads 6997 |
12 | 15 |
13 Barcode Filename Total Retained | 16 Barcode Filename Total Retained |
14 ATGGGG PopA_01 160 160 | 17 ATGGGG PopA_01 160 160 |
15 GGGTAA PopA_02 146 146 | 18 GGGTAA PopA_02 146 146 |
16 AGGAAA PopA_03 224 224 | 19 AGGAAA PopA_03 224 224 |
21 ATAAGT PopA_08 232 232 | 24 ATAAGT PopA_08 232 232 |
22 AAGATA PopA_09 182 182 | 25 AAGATA PopA_09 182 182 |
23 TGTGAG PopA_10 168 168 | 26 TGTGAG PopA_10 168 168 |
24 ATAGTT PopA_11 200 200 | 27 ATAGTT PopA_11 200 200 |
25 GGAAGG PopA_12 178 178 | 28 GGAAGG PopA_12 178 178 |
26 TTTGTG PopA_13 190 190 | 29 TTTGTG PopA_13 189 189 |
27 TTAAAT PopA_14 166 166 | 30 TTAAAT PopA_14 166 166 |
28 AATAAG PopA_15 152 152 | 31 AATAAG PopA_15 152 152 |
29 AAGAGG PopA_16 174 174 | 32 AAGAGG PopA_16 174 174 |
30 TAGTGT PopA_17 242 242 | 33 TAGTGT PopA_17 242 242 |
31 TGGAAG PopA_18 148 148 | 34 TGGAAG PopA_18 148 148 |
41 ATATAT PopB_07 242 242 | 44 ATATAT PopB_07 242 242 |
42 GATGAG PopB_08 208 208 | 45 GATGAG PopB_08 208 208 |
43 GGGAAT PopB_09 198 198 | 46 GGGAAT PopB_09 198 198 |
44 AGTAAT PopB_10 164 164 | 47 AGTAAT PopB_10 164 164 |
45 GGGATA PopB_11 146 146 | 48 GGGATA PopB_11 146 146 |
46 GAGAAG PopB_12 162 162 | 49 GAGAAG PopB_12 161 161 |
47 AGTAGA PopB_13 204 204 | 50 AGTAGA PopB_13 204 204 |
48 AAGGAT PopB_14 180 180 | 51 AAGGAT PopB_14 180 180 |
49 AGGGTA PopB_15 134 134 | 52 AGGGTA PopB_15 134 134 |
50 TGTTTT PopB_16 138 138 | 53 TGTTTT PopB_16 138 138 |
51 ATGATG PopB_17 142 142 | 54 ATGATG PopB_17 142 142 |
52 GAGTTA PopB_18 160 160 | 55 GAGTTA PopB_18 159 159 |
53 ATGTAG PopB_19 146 146 | 56 ATGTAG PopB_19 146 146 |
54 | 57 |
55 Sequences not recorded | 58 Sequences not recorded |
56 Barcode Total | 59 Barcode Total |