Mercurial > repos > iuc > stacks2_sstacks

comparison test-data/gstacks/gstacks.log.distribs @ 2:0b8c84a7fdb5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f55e2407891a3c1f73f14a77b7ddadcd6f5eb1f8"
author iuc
date Wed, 15 Jul 2020 17:20:51 -0400
parents b7babdb3c219
children d9bf483266a1
comparison
equal deleted inserted replaced
1:e58e2ecb6285 2:0b8c84a7fdb5
17 17
18 BEGIN clockings 18 BEGIN clockings
19 Num. threads: 1 19 Num. threads: 1
20 Parallel time: 0.0 20 Parallel time: 0.0
21 Average thread time spent: 21 Average thread time spent:
22 0.0 reading (3.1%) 22 0.0 reading (3.0%)
23 0.0 processing (95.2%) 23 0.0 processing (95.7%)
24 0.0 pre-alignments block (72.2%) 24 0.0 pre-alignments block (74.4%)
25 0.0 reformatting fw-reads (0.1%) 25 0.0 reformatting fw-reads (0.2%)
26 0.0 assembling (22.2%) 26 0.0 assembling (27.3%)
27 0.0 initializing alignments (5.4%) 27 0.0 initializing alignments (8.7%)
28 0.0 aligning (42.9%) 28 0.0 aligning (36.6%)
29 0.0 merging read pairs (1.5%) 29 0.0 merging read pairs (1.6%)
30 0.0 post-alignments block (21.2%) 30 0.0 post-alignments block (19.8%)
31 0.0 filtering reads (0.0%) 31 0.0 filtering reads (0.0%)
32 0.0 counting nucleotides (3.5%) 32 0.0 counting nucleotides (3.2%)
33 0.0 genotyping (1.9%) 33 0.0 genotyping (1.5%)
34 0.0 haplotyping (1.0%) 34 0.0 haplotyping (0.9%)
35 0.0 computing consensus (0.1%) 35 0.0 computing consensus (0.1%)
36 0.0 building_fa (0.1%) 36 0.0 building_fa (0.1%)
37 0.0 building_vcf (14.6%) 37 0.0 building_vcf (14.0%)
38 0.0 writing_fa (0.1%) 38 0.0 writing_fa (0.0%)
39 0.0 writing_vcf (1.3%) 39 0.0 writing_vcf (0.9%)
40 0.0 clocking (0.2%) 40 0.0 clocking (0.1%)
41 Total time spent writing vcf: 0.0 (1.3%) 41 Total time spent writing vcf: 0.0 (0.8%)
42 VCFwrite block size: mean=1.0(n=3); max=1 42 VCFwrite block size: mean=1.0(n=3); max=1
43 END clockings 43 END clockings