Mercurial > repos > iuc > stacks2_sstacks

comparison stacks_sstacks.xml @ 6:9586f08634c0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 2f4c9bfc48d63075ae18a1687e8d01ffea509084
author iuc
date Wed, 11 May 2022 06:51:14 +0000
parents 09b8edb56d80
children
comparison
equal deleted inserted replaced
5:09b8edb56d80 6:9586f08634c0
112 <not_has_text text="--disable-gapped"/> 112 <not_has_text text="--disable-gapped"/>
113 <not_has_text text="-M"/> 113 <not_has_text text="-M"/>
114 </assert_command> 114 </assert_command>
115 <output name="output_log" ftype="txt"><assert_contents><has_text text="done."/></assert_contents></output> 115 <output name="output_log" ftype="txt"><assert_contents><has_text text="done."/></assert_contents></output>
116 <output_collection name="matches" type="list" count="2"> 116 <output_collection name="matches" type="list" count="2">
117 <element name="PopA_01.matches"><assert_contents><has_text text="# sstacks completed on "/></assert_contents></element> 117 <expand macro="test_element_stacks_completed" element_name="PopA_01.matches" />
118 <element name="PopA_02.matches"><assert_contents><has_text text="# sstacks completed on "/></assert_contents></element> 118 <expand macro="test_element_stacks_completed" element_name="PopA_02.matches" />
119 </output_collection> 119 </output_collection>
120 </test> 120 </test>
121 121
122 <!-- test w non default parameters and popmap--> 122 <!-- test w non default parameters and popmap-->
123 <test expect_num_outputs="1"> 123 <test expect_num_outputs="1">
147 <not_has_text text="--disable-gapped"/> 147 <not_has_text text="--disable-gapped"/>
148 <has_text text="-M"/> 148 <has_text text="-M"/>
149 </assert_command> 149 </assert_command>
150 <assert_stderr><has_text text="done."/></assert_stderr> 150 <assert_stderr><has_text text="done."/></assert_stderr>
151 <output_collection name="matches" type="list" count="2"> 151 <output_collection name="matches" type="list" count="2">
152 <element name="PopA_01.matches"><assert_contents><has_text text="# sstacks completed on "/></assert_contents></element> 152 <expand macro="test_element_stacks_completed" element_name="PopA_01.matches" />
153 <element name="PopA_02.matches"><assert_contents><has_text text="# sstacks completed on "/></assert_contents></element> 153 <expand macro="test_element_stacks_completed" element_name="PopA_02.matches" />
154 </output_collection> 154 </output_collection>
155 </test> 155 </test>
156 </tests> 156 </tests>
157 157
158 <help> 158 <help>