Mercurial > repos > iuc > stacks2_sstacks
comparison test-data/refmap/populations.log.distribs @ 0:b7babdb3c219 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
author | iuc |
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date | Mon, 01 Jul 2019 11:01:59 -0400 |
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1 # Note: Individual distributions can be extracted using the `stacks-dist-extract` utility. | |
2 # e.g. `stacks-dist-extract populations.log.distribs dist_name` | |
3 | |
4 BEGIN batch_progress | |
5 Contig_95: analyzed 1 loci; filtered 0 loci; 1 loci seen. | |
6 94 genomic sites, of which 0 were covered by multiple loci (0.0%). | |
7 Contig_1381: analyzed 2 loci; filtered 0 loci; 2 loci seen. | |
8 94 genomic sites, of which 94 were covered by multiple loci (100.0%). | |
9 Contig_2103: analyzed 2 loci; filtered 0 loci; 2 loci seen. | |
10 94 genomic sites, of which 94 were covered by multiple loci (100.0%). | |
11 Contig_2644: analyzed 2 loci; filtered 0 loci; 2 loci seen. | |
12 94 genomic sites, of which 94 were covered by multiple loci (100.0%). | |
13 Contig_3015: analyzed 2 loci; filtered 0 loci; 2 loci seen. | |
14 94 genomic sites, of which 94 were covered by multiple loci (100.0%). | |
15 Contig_3253: analyzed 2 loci; filtered 0 loci; 2 loci seen. | |
16 94 genomic sites, of which 94 were covered by multiple loci (100.0%). | |
17 Contig_3569: analyzed 2 loci; filtered 0 loci; 2 loci seen. | |
18 94 genomic sites, of which 94 were covered by multiple loci (100.0%). | |
19 END batch_progress | |
20 | |
21 BEGIN samples_per_loc_prefilters | |
22 # Distribution of valid samples matched to a catalog locus prior to filtering. | |
23 n_samples n_loci | |
24 2 13 | |
25 END samples_per_loc_prefilters | |
26 | |
27 BEGIN missing_samples_per_loc_prefilters | |
28 # Distribution of missing samples for each catalog locus prior to filtering. | |
29 # Absent samples at locus Count | |
30 0 13 | |
31 END missing_samples_per_loc_prefilters | |
32 | |
33 BEGIN snps_per_loc_prefilters | |
34 # Distribution of the number of SNPs per catalog locus prior to filtering. | |
35 n_snps n_loci | |
36 0 10 | |
37 2 3 | |
38 END snps_per_loc_prefilters | |
39 | |
40 BEGIN samples_per_loc_postfilters | |
41 # Distribution of valid samples matched to a catalog locus after filtering. | |
42 n_samples n_loci | |
43 2 13 | |
44 END samples_per_loc_postfilters | |
45 | |
46 BEGIN missing_samples_per_loc_postfilters | |
47 # Distribution of missing samples for each catalog locus after filtering. | |
48 # Absent samples at locus Count | |
49 0 13 | |
50 END missing_samples_per_loc_postfilters | |
51 | |
52 BEGIN snps_per_loc_postfilters | |
53 # Distribution of the number of SNPs per catalog locus (after filtering). | |
54 n_snps n_loci | |
55 0 10 | |
56 2 3 | |
57 END snps_per_loc_postfilters |