Mercurial > repos > iuc > stacks2_sstacks

comparison stacks_sstacks.xml @ 1:e58e2ecb6285 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
author iuc
date Mon, 30 Sep 2019 14:14:39 -0400
parents b7babdb3c219
children 0b8c84a7fdb5
comparison
equal deleted inserted replaced
0:b7babdb3c219 1:e58e2ecb6285
79 <param name="popmap" ftype="tabular" value="denovo_map/popmap_cstacks.tsv" /> 79 <param name="popmap" ftype="tabular" value="denovo_map/popmap_cstacks.tsv" />
80 <param name="add_log" value="yes" /> 80 <param name="add_log" value="yes" />
81 <assert_command> 81 <assert_command>
82 <not_has_text text="-x" /> 82 <not_has_text text="-x" />
83 <not_has_text text="--disable-gapped" /> 83 <not_has_text text="--disable-gapped" />
84 <not_has_text text="-M" /> 84 <has_text text="-M" />
85 </assert_command> 85 </assert_command>
86 <output name="output_log" ftype="txt" file="sstacks/sstacks.log"/> 86 <output name="output_log" ftype="txt" file="sstacks/sstacks.log"/>
87 <output_collection name="matches" type="list"> 87 <output_collection name="matches" type="list">
88 <element name="PopA_01.matches" file="sstacks/PopA_01.matches.tsv" ftype="tabular" lines_diff="2"/> 88 <element name="PopA_01.matches" file="sstacks/PopA_01.matches.tsv" ftype="tabular" lines_diff="2"/>
89 <element name="PopA_02.matches" file="sstacks/PopA_02.matches.tsv" ftype="tabular" lines_diff="2"/> 89 <element name="PopA_02.matches" file="sstacks/PopA_02.matches.tsv" ftype="tabular" lines_diff="2"/>
144 <param name="x" value="-x" /> 144 <param name="x" value="-x" />
145 <param name="popmap" ftype="tabular" value="denovo_map/popmap_cstacks.tsv" /> 145 <param name="popmap" ftype="tabular" value="denovo_map/popmap_cstacks.tsv" />
146 <param name="add_log" value="yes" /> 146 <param name="add_log" value="yes" />
147 <assert_command> 147 <assert_command>
148 <has_text text="-x" /> 148 <has_text text="-x" />
149 <has_text text="--disable-gapped" /> 149 <not_has_text text="--disable-gapped" />
150 <has_text text="-M" /> 150 <has_text text="-M" />
151 </assert_command> 151 </assert_command>
152 <output name="output_log" ftype="txt"><assert_contents><has_text text="done." /></assert_contents></output> 152 <output name="output_log" ftype="txt"><assert_contents><has_text text="done." /></assert_contents></output>
153 <output_collection name="matches" type="list" count="2"> 153 <output_collection name="matches" type="list" count="2">
154 <element name="PopA_01.matches"><assert_contents><has_text text="generated on " /></assert_contents></element> 154 <element name="PopA_01.matches"><assert_contents><has_text text="generated on " /></assert_contents></element>