Mercurial > repos > iuc > stacks2_tsv2bam
annotate test-data/procrad/process_radtags.out @ 7:2645575d1bf2 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4
author | iuc |
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date | Mon, 23 May 2022 17:58:38 +0000 |
parents | a4b4bd84f69e |
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rev | line source |
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5
a4b4bd84f69e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
0
diff
changeset
|
1 process_radtags v2.55, executed 2022-01-04 19:49:25 (zlib-1.2.11) |
a4b4bd84f69e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
0
diff
changeset
|
2 process_radtags -p stacks_inputs/ -i fastq -b /tmp/tmp1omqb2_d/files/2/a/2/dataset_2a2dd860-d29c-4b1a-9d82-80c8f91d4013.dat --inline_null -o stacks_outputs -e ecoRI |
0
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
3 File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total |
5
a4b4bd84f69e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
0
diff
changeset
|
4 R1_01.fastq 1375 0 0 801 2176 |
a4b4bd84f69e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
0
diff
changeset
|
5 R1_02.fastq 97 0 0 2078 2175 |
a4b4bd84f69e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
0
diff
changeset
|
6 R1_03.fastq 749 0 0 1427 2176 |
a4b4bd84f69e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
0
diff
changeset
|
7 R1_04.fastq 0 0 0 470 470 |
0
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
8 |
5
a4b4bd84f69e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
0
diff
changeset
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9 Total Sequences 6997 |
0
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
10 Barcode Not Found 0 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
11 Low Quality 0 |
5
a4b4bd84f69e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
0
diff
changeset
|
12 RAD Cutsite Not Found 4776 |
a4b4bd84f69e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
0
diff
changeset
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13 Retained Reads 2221 |
0
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
14 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
15 Barcode Filename Total NoRadTag LowQuality Retained |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
16 ATGGGG PopA_01 160 94 0 66 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
17 GGGTAA PopA_02 146 86 0 60 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
18 AGGAAA PopA_03 224 132 0 92 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
19 TTTAAG PopA_04 168 146 0 22 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
20 GGTGTG PopA_05 220 154 0 66 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
21 TGATGT PopA_06 214 147 0 67 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
22 GGTTGT PopA_07 182 137 0 45 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
23 ATAAGT PopA_08 232 164 0 68 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
24 AAGATA PopA_09 182 134 0 48 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
25 TGTGAG PopA_10 168 128 0 40 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
26 ATAGTT PopA_11 200 132 0 68 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
27 GGAAGG PopA_12 178 136 0 42 |
5
a4b4bd84f69e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
0
diff
changeset
|
28 TTTGTG PopA_13 189 151 0 38 |
0
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
29 TTAAAT PopA_14 166 96 0 70 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
30 AATAAG PopA_15 152 74 0 78 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
31 AAGAGG PopA_16 174 112 0 62 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
32 TAGTGT PopA_17 242 146 0 96 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
33 TGGAAG PopA_18 148 98 0 50 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
34 GGGTTG PopA_19 110 64 0 46 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
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35 CATCAT PopA_20 178 144 0 34 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
36 GGAGAG PopB_20 210 142 0 68 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
37 GTTTTA PopB_01 136 90 0 46 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
38 TGATAA PopB_02 166 108 0 58 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
39 GTTGAT PopB_03 148 74 0 74 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
40 AGATTA PopB_04 180 156 0 24 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
41 GTATAG PopB_05 136 106 0 30 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
42 TTGGGA PopB_06 166 112 0 54 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
43 ATATAT PopB_07 242 156 0 86 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
44 GATGAG PopB_08 208 152 0 56 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
45 GGGAAT PopB_09 198 126 0 72 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
46 AGTAAT PopB_10 164 120 0 44 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
47 GGGATA PopB_11 146 90 0 56 |
5
a4b4bd84f69e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
0
diff
changeset
|
48 GAGAAG PopB_12 161 110 0 51 |
0
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
49 AGTAGA PopB_13 204 146 0 58 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
50 AAGGAT PopB_14 180 128 0 52 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
51 AGGGTA PopB_15 134 72 0 62 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
52 TGTTTT PopB_16 138 98 0 40 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
53 ATGATG PopB_17 142 100 0 42 |
5
a4b4bd84f69e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
0
diff
changeset
|
54 GAGTTA PopB_18 159 111 0 48 |
0
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
55 ATGTAG PopB_19 146 104 0 42 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
56 |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
57 Sequences not recorded |
1b270fc77c81
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
iuc
parents:
diff
changeset
|
58 Barcode Total |