Mercurial > repos > iuc > stacks2_tsv2bam
comparison test-data/populations/populations.snps.vcf @ 0:1b270fc77c81 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
| author | iuc |
|---|---|
| date | Mon, 01 Jul 2019 10:59:53 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:1b270fc77c81 |
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| 1 ##fileformat=VCFv4.2 | |
| 2 ##fileDate=20190617 | |
| 3 ##source="Stacks v2.4" | |
| 4 ##INFO=<ID=AD,Number=R,Type=Integer,Description="Total Depth for Each Allele"> | |
| 5 ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency"> | |
| 6 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> | |
| 7 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data"> | |
| 8 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allele Depth"> | |
| 9 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> | |
| 10 ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality"> | |
| 11 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood"> | |
| 12 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> | |
| 13 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
| 14 ##INFO=<ID=loc_strand,Number=1,Type=Character,Description="Genomic strand the corresponding Stacks locus aligns on"> | |
| 15 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PopA_01 PopA_02 | |
| 16 1 34 . A C . PASS NS=2;AF=0.500 GT:DP:AD:GQ:GL 0/1:18:9,9:40:-20.07,0.00,-20.07 0/1:12:6,6:40:-13.54,-0.00,-13.54 | |
| 17 1 89 . A C . PASS NS=2;AF=0.500 GT:DP:AD:GQ:GL 0/1:18:9,9:40:-20.07,0.00,-20.07 0/1:12:6,6:40:-13.54,-0.00,-13.54 | |
| 18 2 145 . C T . PASS NS=2;AF=0.500 GT:DP:AD:GQ:GL 0/1:17:9,8:40:-17.57,0.00,-20.29 0/1:13:5,8:40:-18.77,-0.00,-10.39 | |
| 19 2 157 . G T . PASS NS=2;AF=0.500 GT:DP:AD:GQ:GL 0/1:17:9,8:40:-17.57,0.00,-20.29 0/1:13:5,8:40:-18.77,-0.00,-10.39 | |
| 20 3 163 . G A . PASS NS=2;AF=0.250 GT:DP:AD:GQ:GL 0/0:23:23,0:40:-0.00,-6.89,-68.45 0/1:23:11,12:40:-28.67,0.00,-25.99 | |
| 21 3 182 . G A . PASS NS=2;AF=0.250 GT:DP:AD:GQ:GL 0/0:23:23,0:40:-0.00,-6.89,-68.45 0/1:23:11,12:40:-28.67,0.00,-25.99 |