Mercurial > repos > iuc > stacks2_tsv2bam
diff test-data/gstacks/gstacks.log.distribs @ 4:69842dd5aa48 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 75f83e7b16127aecc68a58df2cb75062f2a9296a"
| author | iuc |
|---|---|
| date | Wed, 01 Sep 2021 11:32:48 +0000 |
| parents | bf0e43ab0416 |
| children |
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--- a/test-data/gstacks/gstacks.log.distribs Tue Apr 27 09:28:24 2021 +0000 +++ b/test-data/gstacks/gstacks.log.distribs Wed Sep 01 11:32:48 2021 +0000 @@ -19,25 +19,25 @@ Num. threads: 1 Parallel time: 0.0 Average thread time spent: - 0.0 reading (3.0%) - 0.0 processing (95.7%) - 0.0 pre-alignments block (74.4%) - 0.0 reformatting fw-reads (0.2%) - 0.0 assembling (27.3%) - 0.0 initializing alignments (8.7%) - 0.0 aligning (36.6%) + 0.0 reading (2.8%) + 0.0 processing (95.9%) + 0.0 pre-alignments block (76.1%) + 0.0 reformatting fw-reads (0.1%) + 0.0 assembling (17.5%) + 0.0 initializing alignments (4.0%) + 0.0 aligning (52.9%) 0.0 merging read pairs (1.6%) - 0.0 post-alignments block (19.8%) + 0.0 post-alignments block (18.7%) 0.0 filtering reads (0.0%) - 0.0 counting nucleotides (3.2%) - 0.0 genotyping (1.5%) - 0.0 haplotyping (0.9%) + 0.0 counting nucleotides (2.8%) + 0.0 genotyping (1.2%) + 0.0 haplotyping (1.0%) 0.0 computing consensus (0.1%) 0.0 building_fa (0.1%) - 0.0 building_vcf (14.0%) + 0.0 building_vcf (13.4%) 0.0 writing_fa (0.0%) 0.0 writing_vcf (0.9%) - 0.0 clocking (0.1%) -Total time spent writing vcf: 0.0 (0.8%) + 0.0 clocking (0.2%) +Total time spent writing vcf: 0.0 (0.9%) VCFwrite block size: mean=1.0(n=3); max=1 END clockings