Mercurial > repos > iuc > stacks2_tsv2bam
view test-data/procrad/process_radtags.out @ 5:a4b4bd84f69e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
author | iuc |
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date | Thu, 14 Apr 2022 09:29:04 +0000 |
parents | 1b270fc77c81 |
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process_radtags v2.55, executed 2022-01-04 19:49:25 (zlib-1.2.11) process_radtags -p stacks_inputs/ -i fastq -b /tmp/tmp1omqb2_d/files/2/a/2/dataset_2a2dd860-d29c-4b1a-9d82-80c8f91d4013.dat --inline_null -o stacks_outputs -e ecoRI File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total R1_01.fastq 1375 0 0 801 2176 R1_02.fastq 97 0 0 2078 2175 R1_03.fastq 749 0 0 1427 2176 R1_04.fastq 0 0 0 470 470 Total Sequences 6997 Barcode Not Found 0 Low Quality 0 RAD Cutsite Not Found 4776 Retained Reads 2221 Barcode Filename Total NoRadTag LowQuality Retained ATGGGG PopA_01 160 94 0 66 GGGTAA PopA_02 146 86 0 60 AGGAAA PopA_03 224 132 0 92 TTTAAG PopA_04 168 146 0 22 GGTGTG PopA_05 220 154 0 66 TGATGT PopA_06 214 147 0 67 GGTTGT PopA_07 182 137 0 45 ATAAGT PopA_08 232 164 0 68 AAGATA PopA_09 182 134 0 48 TGTGAG PopA_10 168 128 0 40 ATAGTT PopA_11 200 132 0 68 GGAAGG PopA_12 178 136 0 42 TTTGTG PopA_13 189 151 0 38 TTAAAT PopA_14 166 96 0 70 AATAAG PopA_15 152 74 0 78 AAGAGG PopA_16 174 112 0 62 TAGTGT PopA_17 242 146 0 96 TGGAAG PopA_18 148 98 0 50 GGGTTG PopA_19 110 64 0 46 CATCAT PopA_20 178 144 0 34 GGAGAG PopB_20 210 142 0 68 GTTTTA PopB_01 136 90 0 46 TGATAA PopB_02 166 108 0 58 GTTGAT PopB_03 148 74 0 74 AGATTA PopB_04 180 156 0 24 GTATAG PopB_05 136 106 0 30 TTGGGA PopB_06 166 112 0 54 ATATAT PopB_07 242 156 0 86 GATGAG PopB_08 208 152 0 56 GGGAAT PopB_09 198 126 0 72 AGTAAT PopB_10 164 120 0 44 GGGATA PopB_11 146 90 0 56 GAGAAG PopB_12 161 110 0 51 AGTAGA PopB_13 204 146 0 58 AAGGAT PopB_14 180 128 0 52 AGGGTA PopB_15 134 72 0 62 TGTTTT PopB_16 138 98 0 40 ATGATG PopB_17 142 100 0 42 GAGTTA PopB_18 159 111 0 48 ATGTAG PopB_19 146 104 0 42 Sequences not recorded Barcode Total