Mercurial > repos > iuc > stacks2_ustacks

comparison test-data/populations/populations.haps.vcf @ 0:7e5a174bc201 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
author iuc
date Mon, 01 Jul 2019 10:57:49 -0400
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-1:000000000000 0:7e5a174bc201
1 ##fileformat=VCFv4.2
2 ##fileDate=20190617
3 ##source="Stacks v2.4"
4 ##INFO=<ID=AD,Number=R,Type=Integer,Description="Total Depth for Each Allele">
5 ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
6 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
7 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
8 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allele Depth">
9 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
10 ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality">
11 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood">
12 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
13 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
14 ##INFO=<ID=loc_strand,Number=1,Type=Character,Description="Genomic strand the corresponding Stacks locus aligns on">
15 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PopA_01 PopA_02
16 1 1 . AC CA . PASS snp_columns=34,89 GT 0/1 0/1
17 2 1 . CG TT . PASS snp_columns=145,157 GT 0/1 0/1
18 3 1 . GG AA . PASS snp_columns=163,182 GT 0/0 0/1