Mercurial > repos > iuc > stacks2_ustacks

comparison macros.xml @ 6:bb0475c884ff draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 2f4c9bfc48d63075ae18a1687e8d01ffea509084
author iuc
date Wed, 11 May 2022 06:39:40 +0000
parents d1fda11e602f
children 912f904a6e1e
comparison
equal deleted inserted replaced
5:d1fda11e602f 6:bb0475c884ff
8 <yield/> 8 <yield/>
9 </requirements> 9 </requirements>
10 </xml> 10 </xml>
11 11
12 <token name="@TOOL_VERSION@">2.55</token> 12 <token name="@TOOL_VERSION@">2.55</token>
13 <token name="@VERSION_SUFFIX@">2</token> 13 <token name="@VERSION_SUFFIX@">3</token>
14 <token name="@PROFILE@">20.05</token> 14 <token name="@PROFILE@">20.05</token>
15 15
16 <xml name="citation"> 16 <xml name="citation">
17 <citations> 17 <citations>
18 <citation type="doi">10.1111/mec.12354</citation> 18 <citation type="doi">10.1111/mec.12354</citation>
630 <option value="--index_index">@TYPE@ is provded in FASTQ header (Illumina i5 and i7 reads) (--index_index)</option> 630 <option value="--index_index">@TYPE@ is provded in FASTQ header (Illumina i5 and i7 reads) (--index_index)</option>
631 <option value="--inline_index">@TYPE@ is inline with sequence on single-end read and occurs in FASTQ header (from either i5 or i7 read) (--inline_index)</option> 631 <option value="--inline_index">@TYPE@ is inline with sequence on single-end read and occurs in FASTQ header (from either i5 or i7 read) (--inline_index)</option>
632 <option value="--index_inline">@TYPE@ occurs in FASTQ header (Illumina i5 or i7 read) and is inline with sequence on single-end read (if single read data) or paired-end read (if paired data) (--index_inline)</option> 632 <option value="--index_inline">@TYPE@ occurs in FASTQ header (Illumina i5 or i7 read) and is inline with sequence on single-end read (if single read data) or paired-end read (if paired data) (--index_inline)</option>
633 </expand> 633 </expand>
634 </xml> 634 </xml>
635 <!-- for tests that check the output for "stacks completed" -->
636 <xml name="test_element_stacks_completed" token_element_name="">
637 <element name="@ELEMENT_NAME@"><assert_contents><has_text text="stacks completed on" /></assert_contents></element>
638 </xml>
635 </macros> 639 </macros>