Mercurial > repos > iuc > stacks2_ustacks

diff test-data/shortreads/process_shortreads.out @ 0:7e5a174bc201 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
author iuc
date Mon, 01 Jul 2019 10:57:49 -0400
parents
children d033e1ccb386
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/shortreads/process_shortreads.out	Mon Jul 01 10:57:49 2019 -0400
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+process_shortreads v2.2, executed 2018-12-03 21:27:19
+process_shortreads -p stacks_inputs/ -i fastq -b /tmp/tmpiZT6X4/files/000/dataset_2.dat --inline_null -o stacks_outputs
+File	Retained Reads	Low Quality	Ambiguous Barcodes	Trimmed Reads	Orphaned paired-end reads	Total
+R1.fastq	7000	0	0	0	0	7000
+
+Total Sequences	7000
+Ambiguous Barcodes	0
+Low Quality	0
+Trimmed Reads	0
+Orphaned Paired-ends	0
+Retained Reads	7000
+
+Barcode	Filename	Total	Retained
+ATGGGG	PopA_01	160	160
+GGGTAA	PopA_02	146	146
+AGGAAA	PopA_03	224	224
+TTTAAG	PopA_04	168	168
+GGTGTG	PopA_05	220	220
+TGATGT	PopA_06	214	214
+GGTTGT	PopA_07	182	182
+ATAAGT	PopA_08	232	232
+AAGATA	PopA_09	182	182
+TGTGAG	PopA_10	168	168
+ATAGTT	PopA_11	200	200
+GGAAGG	PopA_12	178	178
+TTTGTG	PopA_13	190	190
+TTAAAT	PopA_14	166	166
+AATAAG	PopA_15	152	152
+AAGAGG	PopA_16	174	174
+TAGTGT	PopA_17	242	242
+TGGAAG	PopA_18	148	148
+GGGTTG	PopA_19	110	110
+CATCAT	PopA_20	178	178
+GGAGAG	PopB_20	210	210
+GTTTTA	PopB_01	136	136
+TGATAA	PopB_02	166	166
+GTTGAT	PopB_03	148	148
+AGATTA	PopB_04	180	180
+GTATAG	PopB_05	136	136
+TTGGGA	PopB_06	166	166
+ATATAT	PopB_07	242	242
+GATGAG	PopB_08	208	208
+GGGAAT	PopB_09	198	198
+AGTAAT	PopB_10	164	164
+GGGATA	PopB_11	146	146
+GAGAAG	PopB_12	162	162
+AGTAGA	PopB_13	204	204
+AAGGAT	PopB_14	180	180
+AGGGTA	PopB_15	134	134
+TGTTTT	PopB_16	138	138
+ATGATG	PopB_17	142	142
+GAGTTA	PopB_18	160	160
+ATGTAG	PopB_19	146	146
+
+Sequences not recorded
+Barcode	Total