# HG changeset patch
# User iuc
# Date 1579433874 18000
# Node ID 0c741f364d1821fabbd0ad68670369884a117d6f
# Parent  bc108981ca6825023525b3eadc4c01ea1153e5c1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 2b0a6546733e3e090b19e83f4a8b87e09bb11424"

diff -r bc108981ca68 -r 0c741f364d18 stacks_assembleperead.xml
--- a/stacks_assembleperead.xml	Thu Sep 26 10:22:48 2019 -0400
+++ b/stacks_assembleperead.xml	Sun Jan 19 06:37:54 2020 -0500
@@ -1,16 +1,14 @@
-<tool id="stacks_assembleperead" name="Stacks: assemble read pairs by locus" version="@WRAPPER_VERSION@.0">
+<tool id="stacks_assembleperead" name="Stacks: assemble read pairs by locus" version="@WRAPPER_VERSION@.1">
     <description>run the STACKS sort_read_pairs.pl and exec_velvet.pl wrappers</description>
     <macros>
         <import>macros.xml</import>
     </macros>
-    <expand macro="requirements"/>
+    <expand macro="requirements" />
     <expand macro="stdio"/>
     <command><![CDATA[
 
         mkdir stacks_inputs reads stacks_outputs
-
         &&
-
         #for $input_file in $stacks_col
             #set $ext = ""
             #if not str($input_file.element_identifier).endswith('.tsv')
@@ -51,7 +49,7 @@
 
         #if $velvet.use_velvet == "yes"
             ## remove possible empty files
-            && find stacks_outputs -type f -size 0 -delete
+            && find stacks_outputs -type f -size 0 -exec rm {} \;
 
             &&
             mkdir assembled