Mercurial > repos > iuc > stacks_clonefilter

comparison stacks_clonefilter.xml @ 1:a0a51078cb61 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit a82f063287a78c9a237d1d0596b1176632581d42
author iuc
date Fri, 26 May 2017 12:52:40 -0400
parents a8a0cd05d47d
children 5d12a1115770
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0:a8a0cd05d47d 1:a0a51078cb61
86 <param name="oligo_len_1" optional="true" type="integer" label="length of the single-end oligo sequence in data set"/> 86 <param name="oligo_len_1" optional="true" type="integer" label="length of the single-end oligo sequence in data set"/>
87 <param name="oligo_len_2" optional="true" type="integer" label="length of the paired-end oligo sequence in data set"/> 87 <param name="oligo_len_2" optional="true" type="integer" label="length of the paired-end oligo sequence in data set"/>
88 88
89 </inputs> 89 </inputs>
90 <outputs> 90 <outputs>
91 <data format="fastqsangergz" name="clean" from_work_dir="clone_outputs/R1.fq.gz"> 91 <data format="fastqsanger.gz" name="clean" from_work_dir="clone_outputs/R1.fq.gz">
92 <filter>data_type['dt_select'] == 'single'</filter> 92 <filter>data_type['dt_select'] == 'single'</filter>
93 </data> 93 </data>
94 94
95 <data format="fastqsangergz" name="clean_fwd" from_work_dir="clone_outputs/R1.1.fq.gz"> 95 <data format="fastqsanger.gz" name="clean_fwd" from_work_dir="clone_outputs/R1.1.fq.gz">
96 <filter>data_type['dt_select'] == 'pair'</filter> 96 <filter>data_type['dt_select'] == 'pair'</filter>
97 </data> 97 </data>
98 <data format="fastqsangergz" name="clean_rev" from_work_dir="clone_outputs/R2.2.fq.gz"> 98 <data format="fastqsanger.gz" name="clean_rev" from_work_dir="clone_outputs/R2.2.fq.gz">
99 <filter>data_type['dt_select'] == 'pair'</filter> 99 <filter>data_type['dt_select'] == 'pair'</filter>
100 </data> 100 </data>
101 </outputs> 101 </outputs>
102 <tests> 102 <tests>
103 <test> 103 <test>