Mercurial > repos > iuc > stacks_genotypes

changeset 10:00f4a4e553ae draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 689ccfe1532a4de7b60fe69cd3945601d76aefb6"
author iuc
date Thu, 26 Sep 2019 10:22:20 -0400
parents 5af94af9ec8f
children 46f061f3cfeb
files macros.xml stacks_genotypes.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Sun May 21 18:53:07 2017 -0400
+++ b/macros.xml	Thu Sep 26 10:22:20 2019 -0400
@@ -316,7 +316,7 @@
         <data format="tabular" name="out_treemix_loci" label="TreeMix format (loci) with ${tool.name} on ${on_string}" from_work_dir="stacks_outputs/batch_1.treemix.log">
             <filter>populations_output['treemix']</filter>
         </data>
-        <data format="tabular" name="out_fastpĥase" label="fastPHASE format with ${tool.name} on ${on_string}" from_work_dir="stacks_outputs/batch_1.un.fastphase.inp">
+        <data format="tabular" name="out_fastphase" label="fastPHASE format with ${tool.name} on ${on_string}" from_work_dir="stacks_outputs/batch_1.un.fastphase.inp">
             <filter>populations_output['fastphase']</filter>
         </data>
         <data format="tabular" name="out_phase" label="PHASE format with ${tool.name} on ${on_string}" from_work_dir="stacks_outputs/batch_1.un.phase.inp">
--- a/stacks_genotypes.xml	Sun May 21 18:53:07 2017 -0400
+++ b/stacks_genotypes.xml	Thu Sep 26 10:22:20 2019 -0400
@@ -117,8 +117,8 @@
             <param name="mindepth" type="integer" value="" optional="true" argument="-m" label="Minimum stack depth required before exporting a locus in a particular individual" />
             <param name="lnl" type="float" value="" optional="true" argument="--lnl_lim" label="Filter loci with log likelihood values below this threshold" />
 
-            <param name="whitelist" argument="-W" format="txt,tabular" type="data" optional="true" label="Specify a file containing Whitelisted markers to include in the export" />
-            <param name="blacklist" argument="-B" format="txt,tabular" type="data" optional="true" label="Specify a file containing Blacklisted markers to be excluded from the export" />
+            <param name="whitelist" argument="-W" format="txt,tabular" type="data" optional="true" label="Specify a file containing markers to include in the export" />
+            <param name="blacklist" argument="-B" format="txt,tabular" type="data" optional="true" label="Specify a file containing markers to exclude from the export" />
 
             <param name="manual_cor" argument="--cor_path" type="data" format="tabular,txt" optional="true" label="Path to file containing manual genotype corrections from a Stacks SQL database to incorporate into output." />