Mercurial > repos > iuc > stacks_procrad
annotate test-data/procrad/process_radtags.out @ 12:eded025438db draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 74ee33c6e30744a6da8deb7116d431d80ee80edb
author | iuc |
---|---|
date | Fri, 07 Apr 2023 22:00:56 +0000 |
parents | 6f9e8593e571 |
children |
rev | line source |
---|---|
0
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
1 process_radtags -1 /tmp/tmpTg8Tep/files/000/dataset_1.dat -2 /tmp/tmpTg8Tep/files/000/dataset_2.dat -i fastq -b /tmp/tmpTg8Tep/files/000/dataset_3.dat --inline_null -e ecoRI -y fastq -D -w 0.15 -q -s 10 -o galaxy_outputs |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
2 process_radtags version 1.37 executed 2016-03-31 10:44:24 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
3 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
4 File Retained Reads Low Quality Ambiguous Barcodes Ambiguous RAD-Tag Total |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
5 dataset_1.dat 1767 0 0 233 2000 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
6 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
7 Total Sequences 2000 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
8 Ambiguous Barcodes 0 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
9 Low Quality 0 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
10 Ambiguous RAD-Tag 233 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
11 Retained Reads 1767 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
12 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
13 Barcode Filename Total No RadTag Low Quality Retained |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
14 ATGGGG PopA_01 56 0 0 56 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
15 GGGTAA PopA_02 84 14 0 70 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
16 AGGAAA PopA_03 76 22 0 54 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
17 TTTAAG PopA_04 52 24 0 28 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
18 GGTGTG PopA_05 64 10 0 54 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
19 TGATGT PopA_06 100 32 0 68 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
20 GGTTGT PopA_07 100 31 0 69 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
21 ATAAGT PopA_08 84 12 0 72 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
22 AAGATA PopA_09 68 26 0 42 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
23 TGTGAG PopA_10 0 0 0 0 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
24 ATAGTT PopA_11 52 0 0 52 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
25 GGAAGG PopA_12 36 0 0 36 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
26 TTTGTG PopA_13 44 0 0 44 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
27 TTAAAT PopA_14 52 0 0 52 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
28 AATAAG PopA_15 52 0 0 52 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
29 AAGAGG PopA_16 28 0 0 28 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
30 TAGTGT PopA_17 56 0 0 56 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
31 TGGAAG PopA_18 72 0 0 72 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
32 GGGTTG PopA_19 36 0 0 36 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
33 CATCAT PopA_20 76 24 0 52 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
34 GGAGAG PopB_20 44 0 0 44 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
35 GTTTTA PopB_01 20 0 0 20 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
36 TGATAA PopB_02 64 0 0 64 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
37 GTTGAT PopB_03 40 0 0 40 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
38 AGATTA PopB_04 20 0 0 20 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
39 GTATAG PopB_05 12 0 0 12 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
40 TTGGGA PopB_06 52 0 0 52 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
41 ATATAT PopB_07 40 0 0 40 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
42 GATGAG PopB_08 64 0 0 64 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
43 GGGAAT PopB_09 44 0 0 44 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
44 AGTAAT PopB_10 52 0 0 52 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
45 GGGATA PopB_11 48 0 0 48 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
46 GAGAAG PopB_12 28 0 0 28 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
47 AGTAGA PopB_13 44 0 0 44 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
48 AAGGAT PopB_14 64 22 0 42 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
49 AGGGTA PopB_15 64 0 0 64 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
50 TGTTTT PopB_16 8 0 0 8 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
51 ATGATG PopB_17 0 0 0 0 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
52 GAGTTA PopB_18 44 0 0 44 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
53 ATGTAG PopB_19 60 16 0 44 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
54 |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
55 Sequences not recorded |
6f9e8593e571
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
iuc
parents:
diff
changeset
|
56 Barcode Total |