Mercurial > repos > iuc > stacks_procrad

diff stacks_procrad.xml @ 9:57910d476be9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 6ecb1ddafc5575514f9929430e5452027ad02439
author iuc
date Sun, 21 May 2017 18:52:17 -0400
parents bec1f08cdfcc
children be78e39d56b3
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line diff
--- a/stacks_procrad.xml	Thu Apr 27 04:19:34 2017 -0400
+++ b/stacks_procrad.xml	Sun May 21 18:52:17 2017 -0400
@@ -90,8 +90,7 @@
                 <param name="input_single" argument="-f" format="fastqsanger,fastqsanger.gz" type="data" label="singles-end reads infile(s)" help="input files" />
 
                 <param name="barcode_encoding" type="select" label="Barcode location">
-                    <option value="--inline_null" selected="True">Barcode is inline with sequence</option>
-                    <option value="--index_null">Barcode is provided in FASTQ header</option>
+                    <expand macro="barcode_encoding_single" />
                 </param>
             </when>
             <when value="paired">
@@ -99,12 +98,7 @@
                 <param name="inputs_paired2" argument="-2" format="fastqsanger,fastqsanger.gz" type="data" label="paired-end reads infile(s) 2" help="Files must have this syntax : name_R2_001.fastq" />
 
                 <param name="barcode_encoding" type="select" label="Barcode location">
-                    <option value="--inline_null" selected="True">Barcode is inline with sequence, only on the single-end read (read 1)</option>
-                    <option value="--index_null">Barcode is provided in FASTQ header, only on the single-end read (read 1)</option>
-                    <option value="--inline_inline">Barcode is inline with sequence, on both single and paired-end read (read 1 and 2)</option>
-                    <option value="--index_index">Barcode is provided in FASTQ header, on both single and paired-end read (read 1 and 2)</option>
-                    <option value="--inline_index">Barcode is inline with sequence on single-end read (read 1), and in FASTQ header for paired-end read (read 2)</option>
-                    <option value="--index_inline">Barcode is provided in FASTQ header on single-end read (read 1), and is inline with sequence on paired-end read (read 2)</option>
+                    <expand macro="barcode_encoding_pair" />
                 </param>
             </when>
         </conditional>