Mercurial > repos > iuc > stacks_refmap
comparison macros.xml @ 9:4ee074ca88fb draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 6ecb1ddafc5575514f9929430e5452027ad02439
| author | iuc |
|---|---|
| date | Sun, 21 May 2017 18:53:45 -0400 |
| parents | c209e3f3359b |
| children | 7c42e6768c41 |
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| 8:c209e3f3359b | 9:4ee074ca88fb |
|---|---|
| 389 <when value="fixed"> | 389 <when value="fixed"> |
| 390 <param name="bc_err_freq" argument="--bc_err_freq" type="float" value="0.1" min="0.0" max="1.0" label="Barcode error frequency" help="between 0 and 1.0"/> | 390 <param name="bc_err_freq" argument="--bc_err_freq" type="float" value="0.1" min="0.0" max="1.0" label="Barcode error frequency" help="between 0 and 1.0"/> |
| 391 </when> | 391 </when> |
| 392 </conditional> | 392 </conditional> |
| 393 </xml> | 393 </xml> |
| 394 | |
| 395 <xml name="barcode_encoding_single"> | |
| 396 <option value="--inline_null" selected="True">Barcode is inline with sequence</option> | |
| 397 <option value="--index_null">Barcode is provided in FASTQ header</option> | |
| 398 </xml> | |
| 399 | |
| 400 <xml name="barcode_encoding_pair"> | |
| 401 <option value="--inline_null" selected="True">Barcode is inline with sequence</option> | |
| 402 <option value="--null_index">random oligo is provded in FASTQ header (Illumina i7 read if both i5 and i7 read are provided).</option> | |
| 403 <option value="--index_null">random oligo is provded in FASTQ header (Illumina i5 or i7 read)</option> | |
| 404 <option value="--inline_inline">random oligo is inline with sequence, occurs on single and paired-end read</option> | |
| 405 <option value="--index_index">random oligo is provded in FASTQ header (Illumina i5 and i7 read)</option> | |
| 406 <option value="--inline_index">random oligo is inline with sequence on single-end read and second oligo occurs in FASTQ header</option> | |
| 407 <option value="--index_inline">random oligo occurs in FASTQ header (Illumina i5 or i7 read) and is inline with sequence on single-end read (if single read data) or paired-end read (if paired data)</option> | |
| 408 </xml> | |
| 394 </macros> | 409 </macros> |