Mercurial > repos > iuc > stacks_refmap
diff stacks_refmap.xml @ 12:d7a482f44e08 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 74ee33c6e30744a6da8deb7116d431d80ee80edb
| author | iuc |
|---|---|
| date | Fri, 07 Apr 2023 22:02:19 +0000 |
| parents | 1ba1185929c1 |
| children |
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--- a/stacks_refmap.xml Tue Mar 22 23:18:13 2022 +0000 +++ b/stacks_refmap.xml Fri Apr 07 22:02:19 2023 +0000 @@ -1,9 +1,9 @@ <tool id="stacks_refmap" name="Stacks: reference map" version="@WRAPPER_VERSION@.0"> <description>the Stacks pipeline with a reference genome (ref_map.pl)</description> - <expand macro="bio_tools"/> <macros> <import>macros.xml</import> </macros> + <expand macro="bio_tools"/> <expand macro="requirements"/> <expand macro="stdio"/> <command><![CDATA[ @@ -151,8 +151,8 @@ </when> </conditional> - <param name="m" type="integer" value="3" label="Minimum depth of coverage" help="specify the minimum depth of coverage to report a stack in pstacks" argument="-m" /> - <param name="P" type="integer" value="" optional="true" label="Minimum depth of coverage in 'progeny' individuals" help="specify the minimum depth of coverage to report a stack in pstacks for 'progeny' individuals" argument="-P" /> + <param argument="-m" type="integer" value="3" label="Minimum depth of coverage" help="specify the minimum depth of coverage to report a stack in pstacks" /> + <param argument="-P" type="integer" value="" optional="true" label="Minimum depth of coverage in 'progeny' individuals" help="specify the minimum depth of coverage to report a stack in pstacks for 'progeny' individuals" /> <!-- SNP Model options --> <section name="snp_options" title="SNP_Model_Options" expanded="False">