Mercurial > repos > iuc > stacks_sstacks

comparison macros.xml @ 12:96de7538bf0c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 74ee33c6e30744a6da8deb7116d431d80ee80edb
author iuc
date Fri, 07 Apr 2023 22:05:37 +0000
parents 563af4497055
children
comparison
equal deleted inserted replaced
11:563af4497055 12:96de7538bf0c
341 <option value="snp" selected="true">SNP</option> 341 <option value="snp" selected="true">SNP</option>
342 <option value="bounded">Bounded SNP</option> 342 <option value="bounded">Bounded SNP</option>
343 <option value="fixed">Fixed</option> 343 <option value="fixed">Fixed</option>
344 </param> 344 </param>
345 <when value="snp"> 345 <when value="snp">
346 <param name="alpha" argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" > 346 <param argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" >
347 <option value="0.1">0.1</option> 347 <option value="0.1">0.1</option>
348 <option value="0.05" selected="True">0.05</option> 348 <option value="0.05" selected="True">0.05</option>
349 <option value="0.01">0.01</option> 349 <option value="0.01">0.01</option>
350 <option value="0.001">0.001</option> 350 <option value="0.001">0.001</option>
351 </param> 351 </param>
352 </when> 352 </when>
353 <when value="bounded"> 353 <when value="bounded">
354 <param name="bound_low" argument="--bound_low" type="float" value="0.0" min="0.0" max="1.0" label="lower bound for epsilon, the error rate" help="between 0 and 1.0"/> 354 <param argument="--bound_low" type="float" value="0.0" min="0.0" max="1.0" label="lower bound for epsilon, the error rate" help="between 0 and 1.0"/>
355 <param name="bound_high" argument="--bound_high" type="float" value="1.0" min="0.0" max="1.0" label="upper bound for epsilon, the error rate" help="between 0 and 1.0" /> 355 <param argument="--bound_high" type="float" value="1.0" min="0.0" max="1.0" label="upper bound for epsilon, the error rate" help="between 0 and 1.0" />
356 <param name="alpha" argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" > 356 <param argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" >
357 <option value="0.1">0.1</option> 357 <option value="0.1">0.1</option>
358 <option value="0.05" selected="True">0.05</option> 358 <option value="0.05" selected="True">0.05</option>
359 <option value="0.01">0.01</option> 359 <option value="0.01">0.01</option>
360 <option value="0.001">0.001</option> 360 <option value="0.001">0.001</option>
361 </param> 361 </param>
371 <option value="snp" selected="true">SNP</option> 371 <option value="snp" selected="true">SNP</option>
372 <option value="bounded">Bounded SNP</option> 372 <option value="bounded">Bounded SNP</option>
373 <option value="fixed">Fixed</option> 373 <option value="fixed">Fixed</option>
374 </param> 374 </param>
375 <when value="snp"> 375 <when value="snp">
376 <param name="alpha" argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" > 376 <param argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" >
377 <option value="0.1">0.1</option> 377 <option value="0.1">0.1</option>
378 <option value="0.05" selected="True">0.05</option> 378 <option value="0.05" selected="True">0.05</option>
379 <option value="0.01">0.01</option> 379 <option value="0.01">0.01</option>
380 <option value="0.001">0.001</option> 380 <option value="0.001">0.001</option>
381 </param> 381 </param>
382 </when> 382 </when>
383 <when value="bounded"> 383 <when value="bounded">
384 <param name="bound_low" argument="--bound_low" type="float" value="0.0" min="0.0" max="1.0" label="lower bound for epsilon, the error rate" help="between 0 and 1.0"/> 384 <param argument="--bound_low" type="float" value="0.0" min="0.0" max="1.0" label="lower bound for epsilon, the error rate" help="between 0 and 1.0"/>
385 <param name="bound_high" argument="--bound_high" type="float" value="1.0" min="0.0" max="1.0" label="upper bound for epsilon, the error rate" help="between 0 and 1.0" /> 385 <param argument="--bound_high" type="float" value="1.0" min="0.0" max="1.0" label="upper bound for epsilon, the error rate" help="between 0 and 1.0" />
386 <param name="alpha" argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" > 386 <param argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" >
387 <option value="0.1">0.1</option> 387 <option value="0.1">0.1</option>
388 <option value="0.05" selected="True">0.05</option> 388 <option value="0.05" selected="True">0.05</option>
389 <option value="0.01">0.01</option> 389 <option value="0.01">0.01</option>
390 <option value="0.001">0.001</option> 390 <option value="0.001">0.001</option>
391 </param> 391 </param>
392 </when> 392 </when>
393 <when value="fixed"> 393 <when value="fixed">
394 <param name="bc_err_freq" argument="--bc_err_freq" type="float" value="0.1" min="0.0" max="1.0" label="Barcode error frequency" help="between 0 and 1.0"/> 394 <param argument="--bc_err_freq" type="float" value="0.1" min="0.0" max="1.0" label="Barcode error frequency" help="between 0 and 1.0"/>
395 </when> 395 </when>
396 </conditional> 396 </conditional>
397 </xml> 397 </xml>
398 398
399 <xml name="barcode_encoding_single"> 399 <xml name="barcode_encoding_single">