Mercurial > repos > iuc > stringtie

comparison test-data/stringtie_out12.gtf @ 22:ae618321f34a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 12bd91ad0bc0a6471f34d1dd342c943f222a17d2
author iuc
date Mon, 30 Jan 2023 12:01:28 +0000
parents 914cfcba0ec8
children
comparison
equal deleted inserted replaced
21:914cfcba0ec8 22:ae618321f34a
1 # StringTie version 2\.2\.1 1 # StringTie version 2\.2\.1
2 # stringtie /[-_/a-zA-Z0-9]+\.dat /[-_/a-zA-Z0-9]+\.dat -E 25 -o /[-_/a-zA-Z0-9]+\.dat -p [0-9]+ -f 0\.15 -m 200 -a 10 -j 1 -c 2 -g 50 -M 0\.95 2 # stringtie /[-_/a-zA-Z0-9]+\.dat /[-_/a-zA-Z0-9]+\.dat -E 25 -o /[-_/a-zA-Z0-9]+\.dat -p [0-9]+ -f 0\.01 -m 200 -a 10 -j 1 -c 1 -g 50 -M 1
3 chr16\tStringTie\texon\t784986\t786377\t1000\t-\t\.\tgene_id "STRG\.[0-9]+"; transcript_id "STRG\.[0-9]+\.[0-9+]"; exon_number "1"; cov "33\.698273"; 3 chr16\tStringTie\texon\t784986\t786377\t1000\t-\t\.\tgene_id "STRG\.[0-9]+"; transcript_id "STRG\.[0-9]+\.[0-9+]"; exon_number "1"; cov "33\.698273";
4 chr16\tStringTie\texon\t786827\t786928\t1000\t-\t\.\tgene_id "STRG\.[0-9]+"; transcript_id "STRG\.[0-9]+\.[0-9+]"; exon_number "2"; cov "24\.970589"; 4 chr16\tStringTie\texon\t786827\t786928\t1000\t-\t\.\tgene_id "STRG\.[0-9]+"; transcript_id "STRG\.[0-9]+\.[0-9+]"; exon_number "2"; cov "24\.970589";
5 chr16\tStringTie\texon\t787077\t787179\t1000\t-\t\.\tgene_id "STRG\.[0-9]+"; transcript_id "STRG\.[0-9]+\.[0-9+]"; exon_number "3"; cov "24\.747572"; 5 chr16\tStringTie\texon\t787077\t787179\t1000\t-\t\.\tgene_id "STRG\.[0-9]+"; transcript_id "STRG\.[0-9]+\.[0-9+]"; exon_number "3"; cov "24\.747572";
6 chr16\tStringTie\texon\t787354\t787477\t1000\t-\t\.\tgene_id "STRG\.[0-9]+"; transcript_id "STRG\.[0-9]+\.[0-9+]"; exon_number "4"; cov "25\.967739"; 6 chr16\tStringTie\texon\t787354\t787477\t1000\t-\t\.\tgene_id "STRG\.[0-9]+"; transcript_id "STRG\.[0-9]+\.[0-9+]"; exon_number "4"; cov "25\.967739";
7 chr16\tStringTie\texon\t787556\t787744\t1000\t-\t\.\tgene_id "STRG\.[0-9]+"; transcript_id "STRG\.[0-9]+\.[0-9+]"; exon_number "5"; cov "21\.576719"; 7 chr16\tStringTie\texon\t787556\t787744\t1000\t-\t\.\tgene_id "STRG\.[0-9]+"; transcript_id "STRG\.[0-9]+\.[0-9+]"; exon_number "5"; cov "21\.576719";