diff test-data/stringtie_out12.gtf @ 18:258d696dbd7e draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
author iuc
date Sat, 25 Sep 2021 18:20:22 +0000
parents
children cef79931dda5
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/stringtie_out12.gtf	Sat Sep 25 18:20:22 2021 +0000
@@ -0,0 +1,73 @@
+# stringtie short_sorted.sam long_sorted.sam -E 25 -o /tmp/tmpgqe071sy/files/9/5/b/dataset_95b1ec38-2151-43e7-8584-aa4aff72e957.dat -p 1 -f 0.15 -m 200 -a 10 -j 1 -c 2 -g 50 -M 0.95
+# StringTie version 2.1.7
+chr19	StringTie	transcript	567221	571736	1000	-	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "5.043160"; FPKM "15396.282227"; TPM "50141.804688";
+chr19	StringTie	exon	567221	567648	1000	-	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "5.815421";
+chr19	StringTie	exon	571440	571596	1000	-	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "2"; cov "3.573089";
+chr19	StringTie	exon	571697	571736	1000	-	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "3"; cov "2.550000";
+chr19	StringTie	transcript	571310	583493	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "4.701019"; FPKM "14351.757812"; TPM "46740.058594";
+chr19	StringTie	exon	571310	571579	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "5.888981";
+chr19	StringTie	exon	580379	580461	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "2"; cov "4.879346";
+chr19	StringTie	exon	580646	580782	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "3"; cov "4.616338";
+chr19	StringTie	exon	581315	581610	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "4"; cov "4.479919";
+chr19	StringTie	exon	582514	582582	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "5"; cov "4.504012";
+chr19	StringTie	exon	582750	583493	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "6"; cov "4.371838";
+chr19	StringTie	transcript	572567	583493	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; cov "6.933517"; FPKM "21167.359375"; TPM "68936.750000";
+chr19	StringTie	exon	572567	572701	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "1"; cov "3.325926";
+chr19	StringTie	exon	577774	578121	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "2"; cov "6.436781";
+chr19	StringTie	exon	579500	579656	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "3"; cov "7.000000";
+chr19	StringTie	exon	580379	580461	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "4"; cov "8.120653";
+chr19	StringTie	exon	580646	580782	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "5"; cov "7.682931";
+chr19	StringTie	exon	581315	581610	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "6"; cov "7.455892";
+chr19	StringTie	exon	582514	582582	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "7"; cov "7.495987";
+chr19	StringTie	exon	582750	583493	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "8"; cov "7.276011";
+chr19	StringTie	transcript	589891	617159	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; cov "19.937536"; FPKM "60867.378906"; TPM "198229.687500";
+chr19	StringTie	exon	589891	590577	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "18.537117";
+chr19	StringTie	exon	603544	603967	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "2"; cov "21.000000";
+chr19	StringTie	exon	605061	605222	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "3"; cov "20.981482";
+chr19	StringTie	exon	607964	608182	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "4"; cov "21.000000";
+chr19	StringTie	exon	610259	610405	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "5"; cov "21.000000";
+chr19	StringTie	exon	613248	613488	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "6"; cov "21.000000";
+chr19	StringTie	exon	613852	614016	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "7"; cov "21.000000";
+chr19	StringTie	exon	615795	617159	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "8"; cov "19.587545";
+chr16	StringTie	transcript	784986	788300	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; cov "30.393349"; FPKM "92787.968750"; TPM "302187.000000";
+chr16	StringTie	exon	784986	786377	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "1"; cov "33.698273";
+chr16	StringTie	exon	786827	786928	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "2"; cov "24.970589";
+chr16	StringTie	exon	787077	787179	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "3"; cov "24.747572";
+chr16	StringTie	exon	787354	787477	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "4"; cov "25.967739";
+chr16	StringTie	exon	787556	787744	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "5"; cov "21.576719";
+chr16	StringTie	exon	788256	788300	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "6"; cov "2.600000";
+chr16	StringTie	transcript	789075	798048	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; cov "24.152929"; FPKM "73736.570312"; TPM "240141.406250";
+chr16	StringTie	exon	789075	789125	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "1"; cov "2.764706";
+chr16	StringTie	exon	789210	789360	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "2"; cov "12.516557";
+chr16	StringTie	exon	789547	789715	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "3"; cov "20.360947";
+chr16	StringTie	exon	790177	790269	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "4"; cov "18.048386";
+chr16	StringTie	exon	790347	790399	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "5"; cov "21.396227";
+chr16	StringTie	exon	790525	790666	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "6"; cov "19.359156";
+chr16	StringTie	exon	791161	791370	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "7"; cov "22.309525";
+chr16	StringTie	exon	791851	791948	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "8"; cov "16.336735";
+chr16	StringTie	exon	792224	792347	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "9"; cov "19.322580";
+chr16	StringTie	exon	792439	792590	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "10"; cov "8.835526";
+chr16	StringTie	exon	792718	792811	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "11"; cov "21.244680";
+chr16	StringTie	exon	792966	793064	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "12"; cov "19.494951";
+chr16	StringTie	exon	793144	793274	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "13"; cov "16.229008";
+chr16	StringTie	exon	794054	794201	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "14"; cov "22.121622";
+chr16	StringTie	exon	795132	795356	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "15"; cov "30.586666";
+chr16	StringTie	exon	795685	795834	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "16"; cov "14.393333";
+chr16	StringTie	exon	795947	796077	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "17"; cov "27.061069";
+chr16	StringTie	exon	796717	796861	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "18"; cov "39.082760";
+chr16	StringTie	exon	796961	797092	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "19"; cov "43.295456";
+chr16	StringTie	exon	797694	797751	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "20"; cov "53.689655";
+chr16	StringTie	exon	797839	798048	1000	+	.	gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "21"; cov "44.473808";
+chr16	StringTie	transcript	854482	911074	1000	-	.	gene_id "STRG.6"; transcript_id "STRG.6.1"; cov "5.773279"; FPKM "17625.265625"; TPM "57401.042969";
+chr16	StringTie	exon	854482	854706	1000	-	.	gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "1"; cov "3.262222";
+chr16	StringTie	exon	868944	869056	1000	-	.	gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "2"; cov "9.176991";
+chr16	StringTie	exon	869883	870066	1000	-	.	gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "3"; cov "11.130435";
+chr16	StringTie	exon	870729	870882	1000	-	.	gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "4"; cov "10.467532";
+chr16	StringTie	exon	871161	871341	1000	-	.	gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "5"; cov "3.563536";
+chr16	StringTie	exon	879570	879737	1000	-	.	gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "6"; cov "2.625000";
+chr16	StringTie	exon	893007	893072	1000	-	.	gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "7"; cov "3.242424";
+chr16	StringTie	exon	910931	911074	1000	-	.	gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "8"; cov "2.770833";
+chr16	StringTie	transcript	934126	970901	1000	-	.	gene_id "STRG.7"; transcript_id "STRG.7.1"; cov "3.068716"; FPKM "9368.495117"; TPM "30510.824219";
+chr16	StringTie	exon	934126	934254	1000	-	.	gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "1"; cov "1.131783";
+chr16	StringTie	exon	954357	954666	1000	-	.	gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "2"; cov "4.341936";
+chr16	StringTie	exon	970788	970901	1000	-	.	gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "3"; cov "1.798246";