Mercurial > repos > iuc > stringtie
diff test-data/stringtie_out12.gtf @ 18:258d696dbd7e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
| author | iuc |
|---|---|
| date | Sat, 25 Sep 2021 18:20:22 +0000 |
| parents | |
| children | cef79931dda5 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/stringtie_out12.gtf Sat Sep 25 18:20:22 2021 +0000 @@ -0,0 +1,73 @@ +# stringtie short_sorted.sam long_sorted.sam -E 25 -o /tmp/tmpgqe071sy/files/9/5/b/dataset_95b1ec38-2151-43e7-8584-aa4aff72e957.dat -p 1 -f 0.15 -m 200 -a 10 -j 1 -c 2 -g 50 -M 0.95 +# StringTie version 2.1.7 +chr19 StringTie transcript 567221 571736 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "5.043160"; FPKM "15396.282227"; TPM "50141.804688"; +chr19 StringTie exon 567221 567648 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "5.815421"; +chr19 StringTie exon 571440 571596 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "2"; cov "3.573089"; +chr19 StringTie exon 571697 571736 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "3"; cov "2.550000"; +chr19 StringTie transcript 571310 583493 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "4.701019"; FPKM "14351.757812"; TPM "46740.058594"; +chr19 StringTie exon 571310 571579 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "5.888981"; +chr19 StringTie exon 580379 580461 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "2"; cov "4.879346"; +chr19 StringTie exon 580646 580782 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "3"; cov "4.616338"; +chr19 StringTie exon 581315 581610 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "4"; cov "4.479919"; +chr19 StringTie exon 582514 582582 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "5"; cov "4.504012"; +chr19 StringTie exon 582750 583493 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "6"; cov "4.371838"; +chr19 StringTie transcript 572567 583493 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; cov "6.933517"; FPKM "21167.359375"; TPM "68936.750000"; +chr19 StringTie exon 572567 572701 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "1"; cov "3.325926"; +chr19 StringTie exon 577774 578121 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "2"; cov "6.436781"; +chr19 StringTie exon 579500 579656 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "3"; cov "7.000000"; +chr19 StringTie exon 580379 580461 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "4"; cov "8.120653"; +chr19 StringTie exon 580646 580782 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "5"; cov "7.682931"; +chr19 StringTie exon 581315 581610 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "6"; cov "7.455892"; +chr19 StringTie exon 582514 582582 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "7"; cov "7.495987"; +chr19 StringTie exon 582750 583493 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "8"; cov "7.276011"; +chr19 StringTie transcript 589891 617159 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; cov "19.937536"; FPKM "60867.378906"; TPM "198229.687500"; +chr19 StringTie exon 589891 590577 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "18.537117"; +chr19 StringTie exon 603544 603967 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "2"; cov "21.000000"; +chr19 StringTie exon 605061 605222 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "3"; cov "20.981482"; +chr19 StringTie exon 607964 608182 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "4"; cov "21.000000"; +chr19 StringTie exon 610259 610405 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "5"; cov "21.000000"; +chr19 StringTie exon 613248 613488 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "6"; cov "21.000000"; +chr19 StringTie exon 613852 614016 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "7"; cov "21.000000"; +chr19 StringTie exon 615795 617159 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "8"; cov "19.587545"; +chr16 StringTie transcript 784986 788300 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; cov "30.393349"; FPKM "92787.968750"; TPM "302187.000000"; +chr16 StringTie exon 784986 786377 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "1"; cov "33.698273"; +chr16 StringTie exon 786827 786928 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "2"; cov "24.970589"; +chr16 StringTie exon 787077 787179 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "3"; cov "24.747572"; +chr16 StringTie exon 787354 787477 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "4"; cov "25.967739"; +chr16 StringTie exon 787556 787744 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "5"; cov "21.576719"; +chr16 StringTie exon 788256 788300 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "6"; cov "2.600000"; +chr16 StringTie transcript 789075 798048 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; cov "24.152929"; FPKM "73736.570312"; TPM "240141.406250"; +chr16 StringTie exon 789075 789125 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "1"; cov "2.764706"; +chr16 StringTie exon 789210 789360 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "2"; cov "12.516557"; +chr16 StringTie exon 789547 789715 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "3"; cov "20.360947"; +chr16 StringTie exon 790177 790269 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "4"; cov "18.048386"; +chr16 StringTie exon 790347 790399 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "5"; cov "21.396227"; +chr16 StringTie exon 790525 790666 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "6"; cov "19.359156"; +chr16 StringTie exon 791161 791370 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "7"; cov "22.309525"; +chr16 StringTie exon 791851 791948 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "8"; cov "16.336735"; +chr16 StringTie exon 792224 792347 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "9"; cov "19.322580"; +chr16 StringTie exon 792439 792590 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "10"; cov "8.835526"; +chr16 StringTie exon 792718 792811 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "11"; cov "21.244680"; +chr16 StringTie exon 792966 793064 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "12"; cov "19.494951"; +chr16 StringTie exon 793144 793274 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "13"; cov "16.229008"; +chr16 StringTie exon 794054 794201 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "14"; cov "22.121622"; +chr16 StringTie exon 795132 795356 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "15"; cov "30.586666"; +chr16 StringTie exon 795685 795834 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "16"; cov "14.393333"; +chr16 StringTie exon 795947 796077 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "17"; cov "27.061069"; +chr16 StringTie exon 796717 796861 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "18"; cov "39.082760"; +chr16 StringTie exon 796961 797092 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "19"; cov "43.295456"; +chr16 StringTie exon 797694 797751 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "20"; cov "53.689655"; +chr16 StringTie exon 797839 798048 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "21"; cov "44.473808"; +chr16 StringTie transcript 854482 911074 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; cov "5.773279"; FPKM "17625.265625"; TPM "57401.042969"; +chr16 StringTie exon 854482 854706 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "1"; cov "3.262222"; +chr16 StringTie exon 868944 869056 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "2"; cov "9.176991"; +chr16 StringTie exon 869883 870066 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "3"; cov "11.130435"; +chr16 StringTie exon 870729 870882 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "4"; cov "10.467532"; +chr16 StringTie exon 871161 871341 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "5"; cov "3.563536"; +chr16 StringTie exon 879570 879737 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "6"; cov "2.625000"; +chr16 StringTie exon 893007 893072 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "7"; cov "3.242424"; +chr16 StringTie exon 910931 911074 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "8"; cov "2.770833"; +chr16 StringTie transcript 934126 970901 1000 - . gene_id "STRG.7"; transcript_id "STRG.7.1"; cov "3.068716"; FPKM "9368.495117"; TPM "30510.824219"; +chr16 StringTie exon 934126 934254 1000 - . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "1"; cov "1.131783"; +chr16 StringTie exon 954357 954666 1000 - . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "2"; cov "4.341936"; +chr16 StringTie exon 970788 970901 1000 - . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "3"; cov "1.798246";