Mercurial > repos > iuc > stringtie
diff test-data/stringtie_out4_re.gtf @ 24:cbf488da3b2c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 8dc7b89b32a9e86c48e9ef7078703ae277bdaf96
| author | iuc |
|---|---|
| date | Mon, 13 May 2024 14:07:55 +0000 |
| parents | 8eb8750070d4 |
| children |
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--- a/test-data/stringtie_out4_re.gtf Tue Apr 30 11:53:08 2024 +0000 +++ b/test-data/stringtie_out4_re.gtf Mon May 13 14:07:55 2024 +0000 @@ -1,5 +1,5 @@ -# stringtie /tmp/tmpm2qmdax_/files/4/2/5/dataset_42595174-c98e-47c3-80d3-4e7f41bf639a.dat -o /tmp/tmpm2qmdax_/job_working_directory/000/19/outputs/dataset_89f0738d-5fec-45ea-b655-2585a71d3d18.dat -p 1 -G guide.gff -b ./special_de_output/sample1/ -f 0.17 -m 200 -a 10 -j 1 -c 1 -g 50 -M 1.0 -A /tmp/tmpm2qmdax_/job_working_directory/000/19/outputs/dataset_793b9d71-4869-4258-a6a5-1d50bd53361f.dat -# StringTie version 2.2.2 +# stringtie /tmp/tmp0_r_zs0r/files/1/4/d/dataset_14d5e119-b917-4862-b08b-d22a834135fb.dat -o /tmp/tmp0_r_zs0r/job_working_directory/000/19/outputs/dataset_1432f44a-4723-48c7-88cd-717a7e8f5918.dat -p 1 -G guide.gff -b ./special_de_output/sample1/ -f 0.17 -m 200 -a 10 -j 1 -c 1 -g 50 -M 1.0 -A /tmp/tmp0_r_zs0r/job_working_directory/000/19/outputs/dataset_7975d0ad-9f63-49cc-9a87-47b0265aa260.dat +# StringTie version 2.2.3 test_chromosome StringTie transcript 53 550 1000 + . gene_id "STRG.1"; transcript_id "STRG.1.1"; reference_id "CUFF.1.1"; ref_gene_id "CUFF.1"; cov "45.241611"; FPKM "3314403.750000"; TPM "1000000.000000"; test_chromosome StringTie exon 53 250 1000 + . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; reference_id "CUFF.1.1"; ref_gene_id "CUFF.1"; cov "49.237373"; test_chromosome StringTie exon 351 400 1000 + . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "2"; reference_id "CUFF.1.1"; ref_gene_id "CUFF.1"; cov "53.000004";