Mercurial > repos > iuc > stringtie
view test-data/stringtie_out12.gtf @ 19:333a6e13b622 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit a586aaa6ef561527cda9e922a2260aa591f43938"
| author | iuc |
|---|---|
| date | Tue, 30 Nov 2021 11:01:34 +0000 |
| parents | 258d696dbd7e |
| children | cef79931dda5 |
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# stringtie short_sorted.sam long_sorted.sam -E 25 -o /tmp/tmpgqe071sy/files/9/5/b/dataset_95b1ec38-2151-43e7-8584-aa4aff72e957.dat -p 1 -f 0.15 -m 200 -a 10 -j 1 -c 2 -g 50 -M 0.95 # StringTie version 2.1.7 chr19 StringTie transcript 567221 571736 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "5.043160"; FPKM "15396.282227"; TPM "50141.804688"; chr19 StringTie exon 567221 567648 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "5.815421"; chr19 StringTie exon 571440 571596 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "2"; cov "3.573089"; chr19 StringTie exon 571697 571736 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "3"; cov "2.550000"; chr19 StringTie transcript 571310 583493 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "4.701019"; FPKM "14351.757812"; TPM "46740.058594"; chr19 StringTie exon 571310 571579 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "5.888981"; chr19 StringTie exon 580379 580461 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "2"; cov "4.879346"; chr19 StringTie exon 580646 580782 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "3"; cov "4.616338"; chr19 StringTie exon 581315 581610 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "4"; cov "4.479919"; chr19 StringTie exon 582514 582582 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "5"; cov "4.504012"; chr19 StringTie exon 582750 583493 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "6"; cov "4.371838"; chr19 StringTie transcript 572567 583493 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; cov "6.933517"; FPKM "21167.359375"; TPM "68936.750000"; chr19 StringTie exon 572567 572701 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "1"; cov "3.325926"; chr19 StringTie exon 577774 578121 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "2"; cov "6.436781"; chr19 StringTie exon 579500 579656 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "3"; cov "7.000000"; chr19 StringTie exon 580379 580461 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "4"; cov "8.120653"; chr19 StringTie exon 580646 580782 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "5"; cov "7.682931"; chr19 StringTie exon 581315 581610 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "6"; cov "7.455892"; chr19 StringTie exon 582514 582582 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "7"; cov "7.495987"; chr19 StringTie exon 582750 583493 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "8"; cov "7.276011"; chr19 StringTie transcript 589891 617159 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; cov "19.937536"; FPKM "60867.378906"; TPM "198229.687500"; chr19 StringTie exon 589891 590577 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "18.537117"; chr19 StringTie exon 603544 603967 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "2"; cov "21.000000"; chr19 StringTie exon 605061 605222 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "3"; cov "20.981482"; chr19 StringTie exon 607964 608182 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "4"; cov "21.000000"; chr19 StringTie exon 610259 610405 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "5"; cov "21.000000"; chr19 StringTie exon 613248 613488 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "6"; cov "21.000000"; chr19 StringTie exon 613852 614016 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "7"; cov "21.000000"; chr19 StringTie exon 615795 617159 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "8"; cov "19.587545"; chr16 StringTie transcript 784986 788300 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; cov "30.393349"; FPKM "92787.968750"; TPM "302187.000000"; chr16 StringTie exon 784986 786377 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "1"; cov "33.698273"; chr16 StringTie exon 786827 786928 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "2"; cov "24.970589"; chr16 StringTie exon 787077 787179 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "3"; cov "24.747572"; chr16 StringTie exon 787354 787477 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "4"; cov "25.967739"; chr16 StringTie exon 787556 787744 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "5"; cov "21.576719"; chr16 StringTie exon 788256 788300 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "6"; cov "2.600000"; chr16 StringTie transcript 789075 798048 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; cov "24.152929"; FPKM "73736.570312"; TPM "240141.406250"; chr16 StringTie exon 789075 789125 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "1"; cov "2.764706"; chr16 StringTie exon 789210 789360 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "2"; cov "12.516557"; chr16 StringTie exon 789547 789715 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "3"; cov "20.360947"; chr16 StringTie exon 790177 790269 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "4"; cov "18.048386"; chr16 StringTie exon 790347 790399 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "5"; cov "21.396227"; chr16 StringTie exon 790525 790666 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "6"; cov "19.359156"; chr16 StringTie exon 791161 791370 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "7"; cov "22.309525"; chr16 StringTie exon 791851 791948 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "8"; cov "16.336735"; chr16 StringTie exon 792224 792347 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "9"; cov "19.322580"; chr16 StringTie exon 792439 792590 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "10"; cov "8.835526"; chr16 StringTie exon 792718 792811 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "11"; cov "21.244680"; chr16 StringTie exon 792966 793064 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "12"; cov "19.494951"; chr16 StringTie exon 793144 793274 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "13"; cov "16.229008"; chr16 StringTie exon 794054 794201 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "14"; cov "22.121622"; chr16 StringTie exon 795132 795356 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "15"; cov "30.586666"; chr16 StringTie exon 795685 795834 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "16"; cov "14.393333"; chr16 StringTie exon 795947 796077 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "17"; cov "27.061069"; chr16 StringTie exon 796717 796861 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "18"; cov "39.082760"; chr16 StringTie exon 796961 797092 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "19"; cov "43.295456"; chr16 StringTie exon 797694 797751 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "20"; cov "53.689655"; chr16 StringTie exon 797839 798048 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "21"; cov "44.473808"; chr16 StringTie transcript 854482 911074 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; cov "5.773279"; FPKM "17625.265625"; TPM "57401.042969"; chr16 StringTie exon 854482 854706 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "1"; cov "3.262222"; chr16 StringTie exon 868944 869056 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "2"; cov "9.176991"; chr16 StringTie exon 869883 870066 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "3"; cov "11.130435"; chr16 StringTie exon 870729 870882 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "4"; cov "10.467532"; chr16 StringTie exon 871161 871341 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "5"; cov "3.563536"; chr16 StringTie exon 879570 879737 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "6"; cov "2.625000"; chr16 StringTie exon 893007 893072 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "7"; cov "3.242424"; chr16 StringTie exon 910931 911074 1000 - . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "8"; cov "2.770833"; chr16 StringTie transcript 934126 970901 1000 - . gene_id "STRG.7"; transcript_id "STRG.7.1"; cov "3.068716"; FPKM "9368.495117"; TPM "30510.824219"; chr16 StringTie exon 934126 934254 1000 - . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "1"; cov "1.131783"; chr16 StringTie exon 954357 954666 1000 - . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "2"; cov "4.341936"; chr16 StringTie exon 970788 970901 1000 - . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "3"; cov "1.798246";