Mercurial > repos > iuc > stringtie
view test-data/stringtie_out2.gtf @ 0:62d212192002 draft
Imported from capsule None
| author | iuc |
|---|---|
| date | Thu, 03 Jul 2014 18:38:02 -0400 |
| parents | |
| children | 9f80c71f1779 |
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chr19 StringTie transcript 3052907 3062360 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "883.073547";FPKM "189664.171875"; chr19 StringTie exon 3052907 3054038 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "966.177673"; chr19 StringTie exon 3054118 3054192 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "2"; cov "1301.127930"; chr19 StringTie exon 3055662 3055724 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "3"; cov "1990.478271"; chr19 StringTie exon 3056310 3056354 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "4"; cov "942.796082"; chr19 StringTie exon 3057677 3057740 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "5"; cov "351.962616"; chr19 StringTie exon 3061158 3061255 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "6"; cov "1122.192017"; chr19 StringTie exon 3062172 3062360 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "7"; cov "214.494049"; chr19 StringTie transcript 3052907 3063089 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.2"; cov "168.800812";FPKM "36254.585938"; chr19 StringTie exon 3052907 3054038 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.2"; exon_number "1"; cov "220.181381"; chr19 StringTie exon 3054118 3054192 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.2"; exon_number "2"; cov "258.932983"; chr19 StringTie exon 3055662 3055724 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.2"; exon_number "3"; cov "176.962967"; chr19 StringTie exon 3056310 3056354 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.2"; exon_number "4"; cov "118.451096"; chr19 StringTie exon 3057677 3057740 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.2"; exon_number "5"; cov "254.885681"; chr19 StringTie exon 3061158 3061255 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.2"; exon_number "6"; cov "78.436821"; chr19 StringTie exon 3062698 3063089 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.2"; exon_number "7"; cov "16.186066"; chr19 StringTie transcript 2997664 3015854 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "115.851471";FPKM "24882.267578"; chr19 StringTie exon 2997664 2997953 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "110.703667"; chr19 StringTie exon 3000645 3000721 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "2"; cov "207.771072"; chr19 StringTie exon 3002351 3002501 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "3"; cov "114.276024"; chr19 StringTie exon 3005435 3005582 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "4"; cov "120.278976"; chr19 StringTie exon 3005719 3005966 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "5"; cov "78.667053"; chr19 StringTie exon 3006418 3006667 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "6"; cov "48.566441"; chr19 StringTie exon 3008867 3008943 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "7"; cov "66.379005"; chr19 StringTie exon 3009540 3009700 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "8"; cov "62.793331"; chr19 StringTie exon 3011020 3011158 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "9"; cov "219.519562"; chr19 StringTie exon 3013667 3013816 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "10"; cov "172.405579"; chr19 StringTie exon 3014568 3014612 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "11"; cov "342.860687"; chr19 StringTie exon 3015651 3015854 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "12"; cov "119.223740"; chr19 StringTie transcript 3018960 3029141 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.2"; cov "18.253860";FPKM "3920.515381"; chr19 StringTie exon 3018960 3019461 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "1"; cov "10.802196"; chr19 StringTie exon 3019697 3019771 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "2"; cov "23.808632"; chr19 StringTie exon 3025018 3025080 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "3"; cov "33.401360"; chr19 StringTie exon 3027827 3027871 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "4"; cov "41.172310"; chr19 StringTie exon 3028317 3028380 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "5"; cov "42.650341"; chr19 StringTie exon 3028704 3028801 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "6"; cov "32.359097"; chr19 StringTie exon 3028879 3029141 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "7"; cov "12.150498"; chr19 StringTie transcript 3018960 3029141 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.3"; cov "5.218285";FPKM "1120.769287"; chr19 StringTie exon 3018960 3019464 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.3"; exon_number "1"; cov "4.017776"; chr19 StringTie exon 3019697 3019771 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.3"; exon_number "2"; cov "15.457561"; chr19 StringTie exon 3025018 3025080 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.3"; exon_number "3"; cov "1.183362"; chr19 StringTie exon 3027827 3027871 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.3"; exon_number "4"; cov "3.434842"; chr19 StringTie exon 3028317 3028380 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.3"; exon_number "5"; cov "20.437429"; chr19 StringTie exon 3028704 3028801 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.3"; exon_number "6"; cov "6.825138"; chr19 StringTie exon 3028879 3029141 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.3"; exon_number "7"; cov "1.572921"; chr19 StringTie transcript 3094613 3119121 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; cov "80.540161";FPKM "17298.201172"; chr19 StringTie exon 3094613 3094785 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "67.409538"; chr19 StringTie exon 3110147 3110331 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "2"; cov "102.204170"; chr19 StringTie exon 3113328 3113482 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "3"; cov "108.144516"; chr19 StringTie exon 3114942 3115070 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "4"; cov "63.896484"; chr19 StringTie exon 3118922 3119121 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "5"; cov "61.832138"; chr19 StringTie transcript 3119186 3123995 1000 + . gene_id "STRG.4"; transcript_id "STRG.4.1"; cov "69.395134";FPKM "14904.501953"; chr19 StringTie exon 3119186 3119357 1000 + . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "1"; cov "71.938263"; chr19 StringTie exon 3120987 3123995 1000 + . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "2"; cov "69.249763"; chr19 StringTie transcript 3136149 3163782 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; cov "13.414832";FPKM "2881.201660"; chr19 StringTie exon 3136149 3136593 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "1"; cov "2.243525"; chr19 StringTie exon 3148589 3148773 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "2"; cov "6.817567"; chr19 StringTie exon 3150129 3150283 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "3"; cov "12.169776"; chr19 StringTie exon 3151705 3151833 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "4"; cov "5.409668"; chr19 StringTie exon 3155821 3155950 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "5"; cov "22.124674"; chr19 StringTie exon 3157726 3157879 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "6"; cov "16.131796"; chr19 StringTie exon 3162791 3163782 1000 + . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "7"; cov "19.328829"; chr19 StringTie transcript 3176651 3177191 1000 . . gene_id "STRG.6"; transcript_id "STRG.6.1"; cov "2.218115";FPKM "476.400818"; chr19 StringTie exon 3176651 3177191 1000 . . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "1"; cov "2.218115"; chr19 StringTie transcript 3178008 3178218 1000 . . gene_id "STRG.7"; transcript_id "STRG.7.1"; cov "2.132701";FPKM "458.055786"; chr19 StringTie exon 3178008 3178218 1000 . . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "1"; cov "2.132701"; chr19 StringTie transcript 3178290 3182254 1000 . . gene_id "STRG.8"; transcript_id "STRG.8.1"; cov "25.143421";FPKM "5400.236816"; chr19 StringTie exon 3178290 3182254 1000 . . gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "1"; cov "25.143421"; chr19 StringTie transcript 3182964 3183191 1000 . . gene_id "STRG.9"; transcript_id "STRG.9.1"; cov "3.289474";FPKM "706.504456"; chr19 StringTie exon 3182964 3183191 1000 . . gene_id "STRG.9"; transcript_id "STRG.9.1"; exon_number "1"; cov "3.289474"; chr19 StringTie transcript 3183534 3184980 1000 . . gene_id "STRG.10"; transcript_id "STRG.10.1"; cov "10.234969";FPKM "2198.239258"; chr19 StringTie exon 3183534 3184980 1000 . . gene_id "STRG.10"; transcript_id "STRG.10.1"; exon_number "1"; cov "10.234969"; chr19 StringTie transcript 3185059 3185762 1000 . . gene_id "STRG.11"; transcript_id "STRG.11.1"; cov "4.474432";FPKM "961.006531"; chr19 StringTie exon 3185059 3185762 1000 . . gene_id "STRG.11"; transcript_id "STRG.11.1"; exon_number "1"; cov "4.474432"; chr19 StringTie transcript 3185993 3209570 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; cov "46.485111";FPKM "9983.947266"; chr19 StringTie exon 3185993 3186212 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "1"; cov "9.429298"; chr19 StringTie exon 3192468 3192658 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "2"; cov "21.059887"; chr19 StringTie exon 3193282 3193426 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "3"; cov "39.715225"; chr19 StringTie exon 3196181 3196275 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "4"; cov "37.911308"; chr19 StringTie exon 3198815 3198895 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "5"; cov "51.996696"; chr19 StringTie exon 3201521 3201624 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "6"; cov "31.073275"; chr19 StringTie exon 3203754 3203842 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "7"; cov "55.852036"; chr19 StringTie exon 3204003 3204142 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "8"; cov "30.771446"; chr19 StringTie exon 3204571 3204749 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "9"; cov "34.595020"; chr19 StringTie exon 3205937 3206024 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "10"; cov "43.030930"; chr19 StringTie exon 3206150 3206188 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "11"; cov "59.276905"; chr19 StringTie exon 3206260 3206423 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "12"; cov "46.387093"; chr19 StringTie exon 3207196 3207249 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "13"; cov "63.118416"; chr19 StringTie exon 3207389 3207467 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "14"; cov "65.674583"; chr19 StringTie exon 3207627 3209570 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "15"; cov "54.248878"; chr19 StringTie transcript 3195437 3209570 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.2"; cov "17.133051";FPKM "3679.790771"; chr19 StringTie exon 3195437 3196275 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.2"; exon_number "1"; cov "10.562823"; chr19 StringTie exon 3198815 3198895 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.2"; exon_number "2"; cov "17.045162"; chr19 StringTie exon 3201521 3201624 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.2"; exon_number "3"; cov "9.639905"; chr19 StringTie exon 3203754 3203842 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.2"; exon_number "4"; cov "14.507616"; chr19 StringTie exon 3204003 3204142 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.2"; exon_number "5"; cov "5.000354"; chr19 StringTie exon 3204571 3204749 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.2"; exon_number "6"; cov "10.209009"; chr19 StringTie exon 3205937 3206024 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.2"; exon_number "7"; cov "16.365309"; chr19 StringTie exon 3206150 3206188 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.2"; exon_number "8"; cov "25.572968"; chr19 StringTie exon 3206263 3206423 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.2"; exon_number "9"; cov "19.185726"; chr19 StringTie exon 3207196 3207249 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.2"; exon_number "10"; cov "38.189373"; chr19 StringTie exon 3207389 3207467 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.2"; exon_number "11"; cov "31.688845"; chr19 StringTie exon 3207627 3209570 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.2"; exon_number "12"; cov "20.523384"; chr19 StringTie transcript 3363620 3364229 1000 . . gene_id "STRG.13"; transcript_id "STRG.13.1"; cov "2.622951";FPKM "563.350403"; chr19 StringTie exon 3363620 3364229 1000 . . gene_id "STRG.13"; transcript_id "STRG.13.1"; exon_number "1"; cov "2.622951"; chr19 StringTie transcript 3366538 3469274 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.1"; cov "71.175430";FPKM "15286.868164"; chr19 StringTie exon 3366538 3366664 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "1"; cov "11.686789"; chr19 StringTie exon 3381710 3382241 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "2"; cov "56.353500"; chr19 StringTie exon 3425104 3425175 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "3"; cov "74.173615"; chr19 StringTie exon 3433516 3433590 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "4"; cov "65.354446"; chr19 StringTie exon 3434275 3434398 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "5"; cov "80.448212"; chr19 StringTie exon 3435081 3435205 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "6"; cov "71.471077"; chr19 StringTie exon 3449012 3449137 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "7"; cov "107.203087"; chr19 StringTie exon 3452480 3452664 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "8"; cov "71.914742"; chr19 StringTie exon 3453761 3453914 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "9"; cov "30.357872"; chr19 StringTie exon 3456548 3456633 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "10"; cov "40.561024"; chr19 StringTie exon 3462750 3469274 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "11"; cov "74.051750"; chr19 StringTie transcript 3366538 3469274 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.2"; cov "18.338432";FPKM "3938.679688"; chr19 StringTie exon 3366538 3366664 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.2"; exon_number "1"; cov "3.412646"; chr19 StringTie exon 3381710 3382241 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.2"; exon_number "2"; cov "15.545184"; chr19 StringTie exon 3425104 3425175 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.2"; exon_number "3"; cov "21.998638"; chr19 StringTie exon 3433516 3433590 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.2"; exon_number "4"; cov "17.916565"; chr19 StringTie exon 3434275 3434398 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.2"; exon_number "5"; cov "24.749645"; chr19 StringTie exon 3435081 3435205 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.2"; exon_number "6"; cov "20.192204"; chr19 StringTie exon 3449012 3449137 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.2"; exon_number "7"; cov "19.043257"; chr19 StringTie exon 3452480 3452664 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.2"; exon_number "8"; cov "32.998787"; chr19 StringTie exon 3462750 3469274 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.2"; exon_number "9"; cov "18.234524"; chr19 StringTie transcript 3472911 3473297 1000 . . gene_id "STRG.15"; transcript_id "STRG.15.1"; cov "2.842377";FPKM "610.478088"; chr19 StringTie exon 3472911 3473297 1000 . . gene_id "STRG.15"; transcript_id "STRG.15.1"; exon_number "1"; cov "2.842377"; chr19 StringTie transcript 3473383 3473585 1000 . . gene_id "STRG.16"; transcript_id "STRG.16.1"; cov "2.216749";FPKM "476.107422"; chr19 StringTie exon 3473383 3473585 1000 . . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "1"; cov "2.216749"; chr19 StringTie transcript 3473881 3474130 1000 . . gene_id "STRG.17"; transcript_id "STRG.17.1"; cov "5.800000";FPKM "1245.708496"; chr19 StringTie exon 3473881 3474130 1000 . . gene_id "STRG.17"; transcript_id "STRG.17.1"; exon_number "1"; cov "5.800000"; chr19 StringTie transcript 3474201 3474891 1000 . . gene_id "STRG.18"; transcript_id "STRG.18.1"; cov "6.512301";FPKM "1398.694580"; chr19 StringTie exon 3474201 3474891 1000 . . gene_id "STRG.18"; transcript_id "STRG.18.1"; exon_number "1"; cov "6.512301"; chr19 StringTie transcript 3475786 3476529 1000 . . gene_id "STRG.19"; transcript_id "STRG.19.1"; cov "4.166667";FPKM "894.905579"; chr19 StringTie exon 3475786 3476529 1000 . . gene_id "STRG.19"; transcript_id "STRG.19.1"; exon_number "1"; cov "4.166667"; chr19 StringTie transcript 3474957 3475188 1000 - . gene_id "STRG.20"; transcript_id "STRG.20.1"; cov "3.719828";FPKM "798.934692"; chr19 StringTie exon 3474957 3475188 1000 - . gene_id "STRG.20"; transcript_id "STRG.20.1"; exon_number "1"; cov "3.719828"; chr19 StringTie transcript 3490820 3500661 1000 - . gene_id "STRG.21"; transcript_id "STRG.21.1"; cov "38.885868";FPKM "8351.802734"; chr19 StringTie exon 3490820 3491809 1000 - . gene_id "STRG.21"; transcript_id "STRG.21.1"; exon_number "1"; cov "49.893391"; chr19 StringTie exon 3492260 3492497 1000 - . gene_id "STRG.21"; transcript_id "STRG.21.1"; exon_number "2"; cov "14.960925"; chr19 StringTie exon 3494026 3494102 1000 - . gene_id "STRG.21"; transcript_id "STRG.21.1"; exon_number "3"; cov "22.457817"; chr19 StringTie exon 3496539 3496884 1000 - . gene_id "STRG.21"; transcript_id "STRG.21.1"; exon_number "4"; cov "35.878857"; chr19 StringTie exon 3500559 3500661 1000 - . gene_id "STRG.21"; transcript_id "STRG.21.1"; exon_number "5"; cov "10.650763";