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view test-data/stringtie_out5.gtf @ 23:8eb8750070d4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 252f4cccd66513c985b3df9480d73c8b9f994520
author iuc
date Tue, 30 Apr 2024 11:53:08 +0000
parents ae618321f34a
children cbf488da3b2c
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# stringtie /tmp/tmpm2qmdax_/files/5/b/5/dataset_5b55cbd8-f515-46d6-b1d2-71201435248b.dat -o /tmp/tmpm2qmdax_/job_working_directory/000/13/outputs/dataset_3b84d9d9-efe9-4d58-9f34-c6d3f5da763f.dat -p 1 -G guide.gff -C /tmp/tmpm2qmdax_/job_working_directory/000/13/outputs/dataset_8fb2eb9a-4a6c-4300-9639-0a39336f7dab.dat -b ./special_de_output/sample1/ -f 0.01 -m 200 -a 10 -j 1 -c 1 -g 50 -M 1.0
# StringTie version 2.2.2
test_chromosome	StringTie	transcript	53	550	1000	+	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; reference_id "CUFF.1.1"; ref_gene_id "CUFF.1"; cov "45.241611"; FPKM "3314403.750000"; TPM "1000000.000000";
test_chromosome	StringTie	exon	53	250	1000	+	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; reference_id "CUFF.1.1"; ref_gene_id "CUFF.1"; cov "49.237373";
test_chromosome	StringTie	exon	351	400	1000	+	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "2"; reference_id "CUFF.1.1"; ref_gene_id "CUFF.1"; cov "53.000004";
test_chromosome	StringTie	exon	501	550	1000	+	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "3"; reference_id "CUFF.1.1"; ref_gene_id "CUFF.1"; cov "21.660000";